CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.213875.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 80.5 PtpAffx.213875.1.S1_at pmrna27062 hypothetical protein - 2e-1 At5g41890 GDSL-motif lipase/hydrolase family protein S.X. H.G.
0.40 67.0 PtpAffx.225905.1.S1_at pmrna45553 hypothetical protein - 3e-2 At2g03060 DNA binding / transcription factor S.X. H.G.
0.05 8.3 Ptp.543.1.A1_at CK088475 - - 4e+0 At3g09490 chloroplast lumen common family protein S.X. H.G.
0.04 6.9 PtpAffx.216803.1.S1_at pmrna31830 hypothetical protein - 4e-4 At5g01860 zinc finger (C2H2 type) family protein S.X. H.G.
0.03 5.2 PtpAffx.203077.1.S1_at pmrna6091 hypothetical protein - 2e-1 At4g08330 unknown protein S.X. H.G.
0.02 3.6 PtpAffx.201423.1.S1_at pmrna2810 hypothetical protein - 3e-10 At3g53750 ACT3 (actin 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.7 99.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
7.2 98.1 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
7.1 98.1 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.4 97.7 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.6 97.2 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.8 96.4 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 5e-15 81 PtpAffx.202763.1.S1_at pmrna5508 hypothetical protein - 2e-1 At2g37600 60S ribosomal protein L36 (RPL36A) C.G. S.X.
0.20 8e-11 67 PtpAffx.210467.1.S1_at pmrna20548 hypothetical protein - 3e+0 At5g06130 chaperone protein dnaJ-related C.G. S.X.
0.13 1e-9 63 PtpAffx.212732.1.S1_at pmrna24904 hypothetical protein - 9e-1 At1g25054 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase C.G. S.X.
0.16 3e-4 46 PtpAffx.208400.1.S1_at pmrna16700 hypothetical protein - 7e-1 At5g19172 - C.G. S.X.
0.03 3e-1 36 PtpAffx.3207.5.S1_a_at DN490131 hypothetical protein - 6e-3 At1g29810 dehydratase family C.G. S.X.
0.03 3e-1 36 PtpAffx.3207.5.S1_at DN490131 - - 6e-3 At1g29810 dehydratase family C.G. S.X.
0.03 3e-1 36 PtpAffx.24069.1.S1_s_at CV275960 hypothetical protein - 3e-1 At1g55310 SR33 C.G. S.X.
0.02 3e-1 36 PtpAffx.200034.1.S1_x_at pmrna60 hypothetical protein - 3e-15 At1g55310 SR33 C.G. S.X.
0.01 1e+0 34 PtpAffx.70149.1.A1_s_at CV262231 hypothetical protein - 4e-6 At5g26850 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 36 Arabidopsis thaliana At5g41890 834194 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:cellular_component unknown;PBOFM - - - C.G. S.X.
0.04 1e+0 34 Glycine max Gma.5814.2.S1_at AI900228 - - 9e-7 At2g24330 unknown protein C.G. S.X.
0.03 4e-1 34 Hordeum vulgare HVSMEg0008N18r2_at HVSMEg0008N18r2 - - 3e-1 At4g00940 Dof-type zinc finger domain-containing protein C.G. S.X.
0.03 6e+0 32 Oryza sativa Os07g0508400 9635.m03190 - - 1e+0 At5g01750 unknown protein C.G. S.X.
0.04 3e+0 32 Triticum aestivum Ta.28646.1.S1_x_at CA654331 - - 3e+0 At5g54560 unknown protein C.G. S.X.
0.05 6e-2 36 Vitis vinifera 1618369_at CF207527 - - 1e+1 Atcg01040 - C.G. S.X.
0.04 1e+0 32 Zea mays ZmAffx.1103.1.A1_at AW191100 - - 1e+1 At5g43700 ATAUX2-11 (AUXIN INDUCIBLE 2-11) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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