Gene omics information

Query gene ID	PtpAffx.213753.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	73.7	PtpAffx.213753.1.S1_s_at	pmrna26859	hypothetical protein	-	5e-25	At1g79620	leucine-rich repeat transmembrane protein kinase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.82	96.3	PtpAffx.143.1.S1_at	CF228932	hypothetical protein	-	3e-5	At5g40720	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.78	95.1	Ptp.2656.1.S1_at	CV256702	hypothetical protein	-	7e-7	At2g40270	protein kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.74	93.8	PtpAffx.207972.1.S1_s_at	pmrna15829	-	-	7e-5	At1g13635	methyladenine glycosylase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.64	88.4	PtpAffx.201753.1.S1_at	pmrna3492	hypothetical protein	-	7e-1	At1g67170	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.58	84.2	PtpAffx.164036.2.S1_at	CV230947	laccase 1c /// laccase 1d	-	3e-11	At2g38080	IRX12 (IRREGULAR XYLEM 12)	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.7536.3.A1_a_at	CV227608	hypothetical protein	-	5e+0	At5g35526	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.70214.1.A1_s_at	CV227234	hypothetical protein	-	2e+0	At2g42820	HVA22F (HVA22-LIKE PROTEIN F)	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.202560.1.S1_at	pmrna5131	leucine-rich repeat transmembrane protein	-	7e-5	At3g17840	RLK902	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
51.0	100.0	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
36.0	100.0	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
0.8	72.0	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
0.4	59.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
0.3	55.0	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.2	49.7	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.2	49.7	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.2	49.7	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.2	49.7	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	5584	PtpAffx.213753.1.S1_at	pmrna26859	hypothetical protein	-	5e-25	At1g79620	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.88	0	3493	PtpAffx.219819.1.S1_at	pmrna35948	hypothetical protein	-	8e-27	At1g79620	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.35	0	1255	PtpAffx.1287.1.A1_s_at	CV233886	hypothetical protein	-	1e-7	At1g79620	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.46	0	726	PtpAffx.208035.1.S1_at	pmrna15951	hypothetical protein	-	3e-9	At1g79620	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	9e-154	545	PtpAffx.95889.1.A1_at	CV228885	hypothetical protein	-	2e-1	At1g14540	anionic peroxidase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	1e-29	133	PtpAffx.208911.1.S1_at	pmrna17675	hypothetical protein	-	1e+0	At2g03010	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	6e-10	67	PtpAffx.74807.1.S1_at	CV225788	-	-	5e-11	At5g49760	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-6	56	PtpAffx.216104.1.S1_at	pmrna30684	hypothetical protein	-	8e-45	At5g54380	THE1 (THESEUS1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-6	56	PtpAffx.216104.1.S1_s_at	pmrna30684	hypothetical protein	-	8e-45	At5g54380	THE1 (THESEUS1)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	5e-25	117	Arabidopsis thaliana	At1g79620	844301	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	9e-15	83	Glycine max	GmaAffx.16523.1.S1_at	CD411170	-	-	4e+0	At4g36740	ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)	C.G.	S.X.	Please select
0.03	3e-6	54	Hordeum vulgare	Contig12884_at	Contig12884	-	-	9e-9	At1g06840	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.11	5e-14	81	Oryza sativa	Os01g0816600	NM_191078.1	-	Protein kinase domain containing protein	3e-7	At5g49780	ATP binding / kinase/ protein serine/threonine kinase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-4	50	Triticum aestivum	TaAffx.49749.1.S1_at	CA639769	-	-	1e-12	At1g79620	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.29	3e-153	541	Vitis vinifera	1609428_at	CF215282	hypothetical protein LOC100257037	-	1e-14	At1g79620	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.02	2e-1	38	Zea mays	ZmAffx.914.1.S1_at	AI770970	protein kinase APK1A	-	2e-20	At5g13160	PBS1 (avrPphB susceptible 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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