Gene omics information

Query gene ID	PtpAffx.213720.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	94.9	PtpAffx.213720.1.S1_at	pmrna26774	hypothetical protein	-	9e-9	At3g51610	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.70456.1.A1_at	CK090706	hypothetical protein	-	2e+0	At3g58600	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.53314.1.A1_at	CV229793	hypothetical protein	-	7e-2	At1g14450	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.61388.1.A1_at	BP935694	hypothetical protein	-	1e+0	At5g02770	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.87019.1.A1_at	BP935009	hypothetical protein	-	9e-14	At5g19390	pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.40711.1.A1_a_at	DN496741	hypothetical protein	-	3e-4	At1g53040	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.6	99.4	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
8.9	98.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.5	97.8	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
6.2	97.6	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.80	0	1334	Ptp.3821.1.S1_s_at	CV245704	hypothetical protein	-	7e-9	At3g51610	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.69	0	728	Ptp.6.1.S1_at	CK087495	hypothetical protein	-	5e-4	At3g51610	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-1	38	PtpAffx.215242.1.S1_at	pmrna29320	hypothetical protein	-	7e-17	At1g03560	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-1	36	PtpAffx.63465.1.A1_at	CV239864	-	-	8e-2	At4g39240	kelch repeat-containing F-box family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-1	36	PtpAffx.31834.1.A1_at	CV271177	-	-	3e-5	At3g17930	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e-1	36	PtpAffx.224302.1.S1_at	pmrna42726	hypothetical protein	-	1e-5	At4g16835	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-1	36	PtpAffx.155173.1.S1_at	CV226351	hypothetical protein	-	2e+0	At3g62920	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.24618.1.A1_at	CV254393	hypothetical protein	-	3e-12	At5g63810	BGAL10 (beta-galactosidase 10)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.218162.1.S1_at	pmrna33697	hypothetical protein	-	2e+0	Atmg00630	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	9e-9	61	Arabidopsis thaliana	At3g51610	824324	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.39	7e-35	149	Glycine max	Gma.2509.1.S1_at	BU545027	-	-	1e-4	At3g51610	unknown protein	C.G.	S.X.	Please select
0.11	2e-5	50	Hordeum vulgare	Contig7658_at	Contig7658	-	-	4e-8	At3g51610	unknown protein	C.G.	S.X.	Please select
0.07	2e-8	61	Oryza sativa	Os05g0168400	CR283498	-	Conserved hypothetical protein	3e-1	At3g11400	eukaryotic translation initiation factor 3G / eIF3g	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	2e-6	54	Triticum aestivum	TaAffx.86629.1.S1_at	AJ612548	-	-	1e-5	At3g51610	unknown protein	C.G.	S.X.	Please select
0.37	9e-65	246	Vitis vinifera	1619129_at	CF215433	hypothetical protein LOC100249981	-	4e-3	At3g51610	unknown protein	C.G.	S.X.	Please select
0.17	3e-10	65	Zea mays	Zm.14290.1.S1_at	CD998001	hypothetical protein LOC100278212	-	2e-9	At3g51610	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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