Gene omics information

Query gene ID	PtpAffx.213643.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.213643.1.S1_at	pmrna26649	hypothetical protein	-	1e-8	At5g61520	hexose transporter, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.203877.1.S1_x_at	pmrna7659	hypothetical protein	-	2e-10	At1g28330	DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.203877.1.S1_at	pmrna7659	hypothetical protein	-	2e-10	At1g28330	DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.79594.1.S1_s_at	CK098523	hypothetical protein	-	2e-20	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.210940.1.S1_at	pmrna21497	hypothetical protein	-	5e-39	At5g27320	GID1C (GA INSENSITIVE DWARF1C)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.249.113.S1_at	CV280925	hypothetical protein	-	6e+0	At5g23140	NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.9	99.3	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
11.4	99.2	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
8.5	98.6	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.7	97.9	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.5	97.1	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.9	96.5	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.0	95.3	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0	92.9	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	1e-37	159	PtpAffx.64132.1.S1_at	BP930135	-	-	4e-10	At5g61520	hexose transporter, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	5e-15	83	PtpAffx.204076.1.S1_at	pmrna8050	hypothetical protein	-	5e-5	At3g19940	sugar transporter, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	2e-5	52	Ptp.5716.1.S1_at	AJ698935.1	hypothetical protein	-	4e-6	At1g34580	monosaccharide transporter, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-5	50	PtpAffx.224644.1.S1_at	pmrna43389	-	-	5e-2	At1g11260	STP1 (SUGAR TRANSPORTER 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	7e-5	50	PtpAffx.224567.1.S1_s_at	pmrna43218	hypothetical protein	-	5e-42	At1g50310	STP9 (SUGAR TRANSPORTER 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	7e-5	50	PtpAffx.224567.1.S1_at	pmrna43218	hypothetical protein	-	5e-42	At1g50310	STP9 (SUGAR TRANSPORTER 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	3e-4	48	PtpAffx.224569.1.S1_at	pmrna43220	hypothetical protein	-	6e-20	At1g50310	STP9 (SUGAR TRANSPORTER 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	4e-3	44	Ptp.5719.1.S1_at	CV230467	hypothetical protein	-	5e-24	At1g11260	STP1 (SUGAR TRANSPORTER 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-2	40	PtpAffx.6163.1.S1_at	AJ778035	hypothetical protein	-	1e-86	At3g19820	DWF1 (DWARF 1)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	1e-8	61	Arabidopsis thaliana	At5g61520	836273	hexose transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	7e-8	59	Glycine max	Gma.13872.1.S1_at	BU544185	-	-	3e-21	At4g02050	sugar transporter, putative	C.G.	S.X.	Please select
0.05	2e-2	40	Hordeum vulgare	Contig22330_at	Contig22330	-	-	2e-2	At1g11260	STP1 (SUGAR TRANSPORTER 1)	C.G.	S.X.	Please select
0.03	1e-1	40	Oryza sativa	Os10g0561300	AK068343.1	-	H(+)/MONOSACCHARIDE cotransporter	2e-5	At4g21480	carbohydrate transmembrane transporter/ sugar:hydrogen symporter	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Triticum aestivum	TaAffx.16981.1.A1_at	CK212988	-	-	3e-1	At1g15820	LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6)	C.G.	S.X.	Please select
0.03	2e-1	36	Vitis vinifera	1621210_at	CB979564	hypothetical protein LOC100254184	-	2e-9	At1g68510	LBD42 (LOB DOMAIN-CONTAINING PROTEIN 42)	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	Zm.11743.1.A1_at	BM380381	-	-	3e+0	At1g47946	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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