CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.213475.1.S1_at

Gene name AP2 domain-containing transcription factor /// AP2 domain-containing transcription factor

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.40 67.0 PtpAffx.213475.1.S1_at pmrna26347 AP2 domain-containing transcription factor /// AP2 domain-containing transcription factor - 7e-1 At3g52440 Dof-type zinc finger domain-containing protein S.X. H.G.
0.53 80.5 PtpAffx.9216.2.S1_a_at CV257352 ABC transporter family protein - 2e-5 At5g02270 ATNAP9 S.X. H.G.
0.25 43.6 Ptp.2724.1.S1_s_at DN503650 hypothetical protein - 2e+0 At3g06455 splicing factor-related S.X. H.G.
0.15 25.3 PtpAffx.213476.1.S1_at pmrna26348 AP2 domain-containing transcription factor - 2e-29 At2g28550 RAP2.7 (RELATED TO AP2.7) S.X. H.G.
0.08 12.9 PtpAffx.88546.1.S1_s_at CV262083 Cl-channel clc-7 /// Cl-channel clc-7 - 1e-25 At5g49890 CLC-C (CHLORIDE CHANNEL C) S.X. H.G.
0.01 2.2 PtpAffx.151056.1.S1_at BI122111 hypothetical protein - 1e+0 At3g53065 beta-galactosidase/ sugar binding S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.0 99.8 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
7.4 98.2 GSM327359 Populus balsamifera_20071015_Seedling_continuous_light_6d_3 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3 93.7 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9 87.2 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.81 1e-61 236 PtpAffx.219740.1.S1_s_at pmrna35767 AP2 domain-containing transcription factor - 2e-1 At1g18790 RWP-RK domain-containing protein C.G. S.X.
0.81 1e-61 236 PtpAffx.219740.1.S1_at pmrna35767 AP2 domain-containing transcription factor - 2e-1 At1g18790 RWP-RK domain-containing protein C.G. S.X.
0.02 2e-2 40 PtpAffx.4940.1.A1_at CV277453 hypothetical protein - 3e-12 At2g32810 BGAL9 (Beta galactosidase 9) C.G. S.X.
0.01 1e+0 34 PtpAffx.224437.1.S1_at pmrna42960 hypothetical protein - 1e-3 At5g51750 ATSBT1.3 (ARABIDOPSIS THALIANA SUBTILASE 1.3) C.G. S.X.
0.02 1e+0 34 PtpAffx.216577.1.S1_at pmrna31442 hypothetical protein - 6e-14 At5g24870 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 1e+0 34 PtpAffx.211979.1.S1_at pmrna23526 hypothetical protein - 2e-17 At5g65940 CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) C.G. S.X.
0.01 1e+0 34 PtpAffx.209932.1.S1_at pmrna19582 hypothetical protein - 1e+0 At1g68185 ubiquitin-related C.G. S.X.
0.03 1e+0 34 PtpAffx.1068.1.A1_at CV261465 hypothetical protein - 8e-6 At3g23760 - C.G. S.X.
0.02 1e+0 34 Ptp.3683.1.A1_at CV269372 hypothetical protein - 3e-18 At5g65940 CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-1 34 Arabidopsis thaliana At3g52440 824409 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;POM - - - C.G. S.X.
0.04 1e+0 34 Glycine max GmaAffx.64943.1.A1_at AW350865 - - 3e+0 At5g51545 LPA2 (low psii accumulation2) C.G. S.X.
0.03 3e-1 34 Hordeum vulgare rbags14a14_s_at rbags14a14 - - 5e-3 At1g58120 unknown protein C.G. S.X.
0.05 6e+0 32 Oryza sativa OsAffx.567.1.S1_at - - - 0 C.G. S.X.
0.04 7e-1 34 Triticum aestivum TaAffx.5827.1.S1_at CA697733 - - 8e-1 At3g04990 - C.G. S.X.
0.04 8e-1 32 Vitis vinifera 1614423_at CF517687 hypothetical protein LOC100251623 - 1e-3 At1g80820 CCR2 (CINNAMOYL COA REDUCTASE) C.G. S.X.
0.04 3e-1 34 Zea mays Zm.9355.1.A1_at BM268784 - - 1e+1 At5g19729 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage