Gene omics information

Query gene ID	PtpAffx.213045.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.35	59.7	PtpAffx.213045.1.S1_at	pmrna25528	hypothetical protein	-	5e-24	At2g45650	AGL6 (AGAMOUS-LIKE 6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.200123.1.S1_at	pmrna225	hypothetical protein	-	8e+0	At4g00355	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.201229.1.S1_x_at	pmrna2442	hypothetical protein	-	4e-13	At2g14210	AGL44 (AGAMOUS-LIKE 44)	S.X.	H.G.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.211622.1.S1_at	pmrna22777	-	-	9e-6	At1g35580	CINV1 (cytosolic invertase 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.207952.1.S1_at	pmrna15780	hypothetical protein	-	2e+0	At1g56085	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.108092.1.A1_at	CV254682	-	-	3e+0	At1g02610	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.9	99.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
11.7	99.2	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.0	98.0	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.8	94.9	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1	93.2	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	1e-86	319	PtpAffx.56922.1.A1_at	CV245718	hypothetical protein	-	6e-3	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	7e-24	111	PtpAffx.211490.1.S1_at	pmrna22518	hypothetical protein	-	3e-32	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	6e-18	91	PtpAffx.9092.1.S1_s_at	AF185574.2	hypothetical protein	-	2e-56	At3g02310	SEP2 (SEPALLATA 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	6e-18	91	PtpAffx.9092.1.S1_at	AF185574.2	hypothetical protein	-	2e-56	At3g02310	SEP2 (SEPALLATA 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.25	4e-16	85	PtpAffx.207908.1.S1_at	pmrna15697	hypothetical protein	-	9e-36	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	9e-11	67	PtpAffx.43839.1.S1_at	DN501305	hypothetical protein	-	3e-23	At4g09960	STK (SEEDSTICK)	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	9e-11	67	PtpAffx.43839.1.S1_a_at	DN501305	hypothetical protein	-	3e-23	At4g09960	STK (SEEDSTICK)	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	9e-11	67	PtpAffx.204772.1.S1_at	pmrna9397	hypothetical protein	-	1e-25	At2g14210	AGL44 (AGAMOUS-LIKE 44)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-8	59	Ptp.2578.1.S1_at	AY501392.1	MADS9, AGL24 mads-box transcription factor	-	2e-28	At4g24540	AGL24 (AGAMOUS-LIKE 24)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	5e-24	111	Arabidopsis thaliana	At2g45650	819173	AGL6 (AGAMOUS-LIKE 6)	sequence suggests this encodes a MADS-box transcription factor	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.31	1e-22	107	Glycine max	GmaAffx.70788.1.S1_at	AI959798	-	-	8e-35	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	Contig2198_at	Contig2198	-	-	3e-6	At1g24260	SEP3 (SEPALLATA3)	C.G.	S.X.	Please select
0.06	1e-1	38	Oryza sativa	Os02g0682200	U78782.1	-	MADS box protein	2e-4	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	9e-1	34	Triticum aestivum	TaAffx.50124.1.S1_at	CA745674	-	-	1e-1	At2g28690	unknown protein	C.G.	S.X.	Please select
0.21	8e-14	75	Vitis vinifera	1609046_at	CB971729	hypothetical protein LOC100256085	-	1e-13	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please select
0.04	4e-1	34	Zea mays	Zm.13248.1.A1_at	Y09301.1	-	-	2e-6	At3g57390	AGL18	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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