CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.213043.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.47 74.6 PtpAffx.213043.1.S1_at pmrna25524 hypothetical protein - 1e+0 At5g12050 unknown protein S.X. H.G.
0.31 53.7 PtpAffx.213129.1.S1_at pmrna25694 hypothetical protein - 5e+0 At5g40000 AAA-type ATPase family protein S.X. H.G.
0.21 36.5 PtpAffx.212270.1.S1_s_at pmrna24055 hypothetical protein - 4e-1 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) S.X. H.G.
0.07 11.6 PtpAffx.222184.1.S1_at pmrna39436 hypothetical protein - 3e-3 At4g27680 MSP1 protein, putative / intramitochondrial sorting protein, putative S.X. H.G.
0.05 8.3 PtpAffx.209799.1.S1_at pmrna19332 hypothetical protein - 1e+0 At5g66490 unknown protein S.X. H.G.
0.03 5.2 PtpAffx.205109.1.S1_at pmrna10113 hypothetical protein - 2e-6 At5g09750 HEC3 (HECATE 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.7 99.8 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
9.2 98.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
8.2 98.5 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.7 98.3 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.8 97.4 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.0 96.6 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.8 94.9 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e-1 36 PtpAffx.2710.1.S1_at CV232903 - - 1e-6 At1g32860 glycosyl hydrolase family 17 protein C.G. S.X.
0.01 4e-1 36 PtpAffx.2710.1.S1_a_at CV232903 - - 1e-6 At1g32860 glycosyl hydrolase family 17 protein C.G. S.X.
0.01 4e-1 36 PtpAffx.213943.1.S1_at pmrna27185 hypothetical protein - 4e-6 At1g11290 CRR22 (CHLORORESPIRATORY REDUCTION22) C.G. S.X.
0.01 4e-1 36 PtpAffx.200244.1.S1_at pmrna472 hypothetical protein - 3e-13 At5g13150 ATEXO70C1 (exocyst subunit EXO70 family protein C1) C.G. S.X.
0.03 4e-1 36 Ptp.3021.2.S1_at CV236251 - - 4e-1 At1g16080 unknown protein C.G. S.X.
0.01 2e+0 34 PtpAffx.214142.1.S1_at pmrna27515 hypothetical protein - 3e+0 At5g03944 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.213283.1.S1_at pmrna25976 - - 5e-1 At4g32605 - C.G. S.X.
0.02 2e+0 34 PtpAffx.210217.1.S1_at pmrna20126 AP2/ERF domain-containing transcription factor - 5e-4 At5g53290 CRF3 (CYTOKININ RESPONSE FACTOR 3) C.G. S.X.
0.03 2e+0 34 PtpAffx.200784.1.S1_at pmrna1515 hypothetical protein - 3e-1 At4g18770 MYB98 (myb domain protein 98) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 Arabidopsis thaliana At5g12050 831078 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB - - - C.G. S.X.
0.03 2e+0 34 Glycine max Gma.3217.2.S1_at BI973541 - - 4e-18 At4g16520 ATG8F (autophagy 8f) C.G. S.X.
0.03 2e+0 32 Hordeum vulgare HZ47I09r_s_at HZ47I09r - - 7e-1 At2g40085 unknown protein C.G. S.X.
0.03 9e+0 32 Oryza sativa OsAffx.5142.1.S1_x_at - - - 0 C.G. S.X.
0.03 5e+0 32 Triticum aestivum TaAffx.58810.1.S1_at CA615288 - - 3e+0 At4g28930 unknown protein C.G. S.X.
0.04 9e-2 36 Vitis vinifera 1616260_at CD710902 similar to splicing factor-like protein - 3e+0 At2g24590 splicing factor, putative C.G. S.X.
0.04 5e-1 34 Zea mays Zm.9484.1.A1_at BM269244 - - 9e+0 At5g55330 membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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