CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.213042.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.213042.1.S1_at pmrna25523 hypothetical protein - 7e-15 At5g51780 basix helix-loop-helix (bHLH) family protein S.X. H.G.
0.50 78.6 PtpAffx.39799.1.A1_at CV228717 hypothetical protein - 6e-1 At5g19810 proline-rich extensin-like family protein S.X. H.G.
0.36 61.6 PtpAffx.149510.2.S1_at CA821947 - - 7e+0 At2g47360 unknown protein S.X. H.G.
0.33 57.5 PtpAffx.220523.1.S1_at pmrna36924 hypothetical protein - 7e-1 At2g23610 MES3 (METHYL ESTERASE 3) S.X. H.G.
0.31 53.7 Ptp.3600.1.S1_s_at AF273256.1 sinapyl alcohol dehydrogenase - 5e-5 At4g37980 ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) S.X. H.G.
0.19 32.7 PtpAffx.219974.1.S1_at pmrna36177 hypothetical protein - 2e-3 At2g45040 matrix metalloproteinase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.5 99.8 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
12.2 99.3 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
12.0 99.2 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
11.8 99.2 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
8.0 98.4 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.8 92.1 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1469 PtpAffx.213042.1.S1_s_at pmrna25523 hypothetical protein - 7e-15 At5g51780 basix helix-loop-helix (bHLH) family protein C.G. S.X.
0.80 5e-109 395 PtpAffx.210777.1.S1_at pmrna21147 hypothetical protein - 1e-7 At5g51780 basix helix-loop-helix (bHLH) family protein C.G. S.X.
0.09 9e-9 61 PtpAffx.210776.1.S1_at pmrna21146 hypothetical protein - 4e-1 At1g65320 CBS domain-containing protein C.G. S.X.
0.07 6e-7 56 PtpAffx.200467.1.S1_at pmrna943 hypothetical protein - 4e-1 At4g25410 DNA binding / transcription factor C.G. S.X.
0.04 8e-3 42 PtpAffx.249.308.S1_at CA925779 - - 1e+0 At4g32690 GLB3 C.G. S.X.
0.04 3e-2 40 PtpAffx.249.314.S1_at CX171386 - - 2e-2 At5g61590 AP2 domain-containing transcription factor family protein C.G. S.X.
0.03 1e-1 38 PtpAffx.69818.1.A1_at CV242391 hypothetical protein - 8e-1 At3g25265 LCR4 (Low-molecular-weight cysteine-rich 4) C.G. S.X.
0.01 5e-1 36 PtpAffx.211604.1.S1_at pmrna22743 hypothetical protein - 4e-15 At3g61680 lipase class 3 family protein C.G. S.X.
0.03 5e-1 36 PtpAffx.208272.1.S1_at pmrna16461 hypothetical protein - 3e-2 At3g21220 ATMKK5 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 7e-15 81 Arabidopsis thaliana At5g51780 835252 basix helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PM - - - C.G. S.X.
0.14 2e-25 117 Glycine max Gma.4730.1.S1_at BI968952 - - 1e-23 At5g51780 basix helix-loop-helix (bHLH) family protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HVSMEb0007H18r2_at HVSMEb0007H18r2 - - 6e+0 At5g60220 TET4 (TETRASPANIN4) C.G. S.X.
0.02 7e-1 36 Oryza sativa OsAffx.7001.1.S1_at - - - 0 C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.20857.1.S1_at CA624754 - - 2e-13 At5g11770 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1617036_at CF210807 hypothetical protein LOC100243315 - 2e-5 At3g21070 NADK1 (NAD KINASE 1) C.G. S.X.
0.03 4e-2 38 Zea mays Zm.5101.1.S1_at AY110556.1 hypothetical protein LOC100193724 - 1e-3 At3g01300 protein kinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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