CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.212939.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 94.9 PtpAffx.212939.1.S1_at pmrna25319 hypothetical protein - 2e-8 At5g07380 unknown protein S.X. H.G.
0.40 67.0 PtpAffx.202991.1.S1_at pmrna5919 hypothetical protein - 6e-1 At3g04510 LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2) S.X. H.G.
0.40 67.0 PtpAffx.207643.1.S1_at pmrna15162 hypothetical protein - 3e-1 At3g57390 AGL18 S.X. H.G.
0.29 50.5 PtpAffx.219686.1.S1_at pmrna35660 cytochrome P450 - 1e+0 At3g14650 CYP72A11 S.X. H.G.
0.23 40.5 PtpAffx.225864.1.S1_at pmrna45498 hypothetical protein - 1e+0 At4g16500 cysteine protease inhibitor family protein / cystatin family protein S.X. H.G.
0.21 36.5 PtpAffx.203936.1.S1_at pmrna7766 hypothetical protein - 7e-1 At3g06740 zinc finger (GATA type) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.4 99.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
8.5 98.6 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
8.4 98.6 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.1 97.6 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.3 96.9 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0 95.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4 90.4 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0 88.0 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-11 71 PtpAffx.210713.1.S1_s_at pmrna21015 hypothetical protein - 1e+0 At5g57720 transcriptional factor B3 family protein C.G. S.X.
0.04 2e-11 71 PtpAffx.210713.1.S1_at pmrna21015 hypothetical protein - 1e+0 At5g57720 transcriptional factor B3 family protein C.G. S.X.
0.01 3e-1 38 PtpAffx.203417.1.S1_at pmrna6802 white-brown-complex ABC transporter family - 2e-92 At5g60740 ATPase, coupled to transmembrane movement of substances C.G. S.X.
0.01 3e-1 38 PtpAffx.201073.1.S1_at pmrna2119 f-box family protein - 3e+0 At5g37000 exostosin family protein C.G. S.X.
0.02 3e-1 38 PtpAffx.200579.1.S1_at pmrna1150 hypothetical protein - 1e+0 At3g25717 RTFL16 (ROTUNDIFOLIA LIKE 16) C.G. S.X.
0.01 1e+0 36 PtpAffx.201252.1.S1_at pmrna2483 hypothetical protein - 0 At4g05420 DDB1A (DAMAGED DNA BINDING PROTEIN 1A) C.G. S.X.
0.02 1e+0 36 Ptp.1443.1.S1_at CV270562 hypothetical protein - 8e-44 At1g68050 FKF1 (FLAVIN-BINDING, KELCH REPEAT, F BOX 1) C.G. S.X.
0.02 5e+0 34 PtpAffx.95137.1.A1_at CV258529 - - 8e+0 At5g33898 unknown protein C.G. S.X.
0.01 5e+0 34 PtpAffx.57015.1.A1_at CV242095 hypothetical protein - 4e+0 At2g42750 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-8 61 Arabidopsis thaliana At5g07380 830629 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP - - - C.G. S.X.
0.02 3e-1 38 Glycine max GmaAffx.89985.1.S1_s_at CF805710 - - 4e-3 At4g15790 unknown protein C.G. S.X.
0.01 3e-2 40 Hordeum vulgare Contig14730_at Contig14730 - - 1e-1 At1g11380 unknown protein C.G. S.X.
0.02 2e+0 36 Oryza sativa Os09g0450400 9637.m02440 - - 4e+0 At5g27780 auxin-responsive family protein C.G. S.X.
0.01 1e+0 36 Triticum aestivum TaAffx.85116.1.S1_at CA618046 - - 3e-1 At3g42780 unknown protein C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1612839_at CF414885 hypothetical protein LOC100252266 - 7e-1 At4g32785 - C.G. S.X.
0.01 6e+0 32 Zea mays ZmAffx.1389.1.S1_at 40794996-64 - - 2e+0 At5g41680 protein kinase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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