Gene omics information

Query gene ID PtpAffx.212921.1.S1_s_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5784.2PtpAffx.212921.1.S1_s_atpmrna25278hypothetical protein-4e-27At3g48860unknown proteinS.X.H.G.
0.5078.6Ptp.7883.1.S1_atDN500687hypothetical protein-5e-13At4g24990ATGP4S.X.H.G.
0.4673.7PtpAffx.28706.1.S1_atCK317869hypothetical protein-1e-70At1g17280UBC34 (ubiquitin-conjugating enzyme 34)S.X.H.G.
0.2340.5PtpAffx.74515.1.A1_atCX659834hypothetical protein-2e-21At5g05310unknown proteinS.X.H.G.
0.2238.3PtpAffx.65137.1.S1_atDN493780--5e-3At3g15920phox (PX) domain-containing proteinS.X.H.G.
0.1118.1PtpAffx.11426.1.A1_atCV263606hypothetical protein-9e-15At1g02080transcriptional regulator-relatedS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
6.097.5GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue series
4.696.2GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue series
4.395.8GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.393.7GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.092.9GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.590.9GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue series
2.389.8GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
2.289.3GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
2.088.0GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.088.0GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue series
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
1.0002716PtpAffx.212921.1.S1_atpmrna25278hypothetical protein-4e-27At3g48860unknown proteinC.G.S.X.
0.650940PtpAffx.15727.2.S1_atCV261606hypothetical protein-1e-4At5g23700unknown proteinC.G.S.X.
0.394e-142506PtpAffx.15727.1.S1_atCK094411--3e-1At5g23700unknown proteinC.G.S.X.
0.282e-119430PtpAffx.48293.1.A1_atDN489154hypothetical protein-2e-18At3g48860unknown proteinC.G.S.X.
0.251e-24115PtpAffx.16082.1.S1_atCV227516hypothetical protein-2e-10At5g13260unknown proteinC.G.S.X.
0.068e-23109PtpAffx.18333.1.A1_atCV252615hypothetical protein-3e-1At5g61470zinc finger (C2H2 type) family proteinC.G.S.X.
0.185e-21103PtpAffx.16082.2.S1_a_atCV232704hypothetical protein-2e-11At5g13260unknown proteinC.G.S.X.
0.022e-138PtpAffx.98826.1.S1_s_atCX653746hypothetical protein-2e-96At4g24190SHD (SHEPHERD)C.G.S.X.
0.019e-136PtpAffx.208580.1.S1_atpmrna17019hypothetical protein-2e-14At5g46050PTR3 (PEPTIDE TRANSPORTER 3)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.304e-27123Arabidopsis thalianaAt3g48860824047unknown proteinF:unknown;P:biological_process unknown;C:plasma membrane;MOFBPAV---C.G.S.X.
0.213e-50200Glycine maxGma.5259.1.S1_atBI967317--6e-9At4g25070unknown proteinC.G.S.X.
0.106e-961Hordeum vulgareContig15613_atContig15613--7e-16At3g48860unknown proteinC.G.S.X.
0.066e-654Oryza sativaOs01g0928100AK120714.1-Conserved hypothetical protein5e-12At3g48860unknown proteinC.G.S.X.
0.111e-1171Triticum aestivumTa.12977.1.S1_atBE213668--4e-18At3g48860unknown proteinC.G.S.X.
0.354e-55214Vitis vinifera1612854_atCB974875hypothetical protein LOC100256039-1e-26At3g48860unknown proteinC.G.S.X.
0.027e-238Zea maysZm.479.1.S1_atAF148498.1small auxin up RNA1-2e+0At5g61412unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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