CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.212921.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 84.2 PtpAffx.212921.1.S1_s_at pmrna25278 hypothetical protein - 4e-27 At3g48860 unknown protein S.X. H.G.
0.50 78.6 Ptp.7883.1.S1_at DN500687 hypothetical protein - 5e-13 At4g24990 ATGP4 S.X. H.G.
0.46 73.7 PtpAffx.28706.1.S1_at CK317869 hypothetical protein - 1e-70 At1g17280 UBC34 (ubiquitin-conjugating enzyme 34) S.X. H.G.
0.23 40.5 PtpAffx.74515.1.A1_at CX659834 hypothetical protein - 2e-21 At5g05310 unknown protein S.X. H.G.
0.22 38.3 PtpAffx.65137.1.S1_at DN493780 - - 5e-3 At3g15920 phox (PX) domain-containing protein S.X. H.G.
0.11 18.1 PtpAffx.11426.1.A1_at CV263606 hypothetical protein - 9e-15 At1g02080 transcriptional regulator-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.0 97.5 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.6 96.2 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3 93.7 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0 92.9 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5 90.9 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0 88.0 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 2716 PtpAffx.212921.1.S1_at pmrna25278 hypothetical protein - 4e-27 At3g48860 unknown protein C.G. S.X.
0.65 0 940 PtpAffx.15727.2.S1_at CV261606 hypothetical protein - 1e-4 At5g23700 unknown protein C.G. S.X.
0.39 4e-142 506 PtpAffx.15727.1.S1_at CK094411 - - 3e-1 At5g23700 unknown protein C.G. S.X.
0.28 2e-119 430 PtpAffx.48293.1.A1_at DN489154 hypothetical protein - 2e-18 At3g48860 unknown protein C.G. S.X.
0.25 1e-24 115 PtpAffx.16082.1.S1_at CV227516 hypothetical protein - 2e-10 At5g13260 unknown protein C.G. S.X.
0.06 8e-23 109 PtpAffx.18333.1.A1_at CV252615 hypothetical protein - 3e-1 At5g61470 zinc finger (C2H2 type) family protein C.G. S.X.
0.18 5e-21 103 PtpAffx.16082.2.S1_a_at CV232704 hypothetical protein - 2e-11 At5g13260 unknown protein C.G. S.X.
0.02 2e-1 38 PtpAffx.98826.1.S1_s_at CX653746 hypothetical protein - 2e-96 At4g24190 SHD (SHEPHERD) C.G. S.X.
0.01 9e-1 36 PtpAffx.208580.1.S1_at pmrna17019 hypothetical protein - 2e-14 At5g46050 PTR3 (PEPTIDE TRANSPORTER 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 4e-27 123 Arabidopsis thaliana At3g48860 824047 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane;MOFBPAV - - - C.G. S.X.
0.21 3e-50 200 Glycine max Gma.5259.1.S1_at BI967317 - - 6e-9 At4g25070 unknown protein C.G. S.X.
0.10 6e-9 61 Hordeum vulgare Contig15613_at Contig15613 - - 7e-16 At3g48860 unknown protein C.G. S.X.
0.06 6e-6 54 Oryza sativa Os01g0928100 AK120714.1 - Conserved hypothetical protein 5e-12 At3g48860 unknown protein C.G. S.X.
0.11 1e-11 71 Triticum aestivum Ta.12977.1.S1_at BE213668 - - 4e-18 At3g48860 unknown protein C.G. S.X.
0.35 4e-55 214 Vitis vinifera 1612854_at CB974875 hypothetical protein LOC100256039 - 1e-26 At3g48860 unknown protein C.G. S.X.
0.02 7e-2 38 Zea mays Zm.479.1.S1_at AF148498.1 small auxin up RNA1 - 2e+0 At5g61412 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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