CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.212850.1.S1_at

Gene name lysine/histidine transporter

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.212850.1.S1_at pmrna25146 lysine/histidine transporter - 9e-28 At5g40780 LHT1 S.X. H.G.
0.21 36.5 PtpAffx.207501.1.S1_at pmrna14897 glycosyltransferase - 1e-39 At3g25140 QUA1 (QUASIMODO 1) S.X. H.G.
0.07 11.6 PtpAffx.1172.2.A1_at CV232336 - - 1e+0 At1g48780 unknown protein S.X. H.G.
0.04 6.9 PtpAffx.214837.1.S1_at pmrna28728 white-brown-complex ABC transporter family - 4e-3 At4g27420 ABC transporter family protein S.X. H.G.
0.02 3.6 PtpAffx.61161.1.A1_at CV240842 hypothetical protein - 5e+0 At5g22190 unknown protein S.X. H.G.
0.02 3.6 PtpAffx.154543.1.A1_a_at CV268890 - - 5e-24 At4g34490 ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.5 99.8 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
14.2 99.5 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
7.0 98.0 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
7.0 98.0 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.7 97.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.9 96.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1 88.6 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.5 83.5 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 6e-48 192 PtpAffx.152030.1.S1_at CA822109 - - 2e-33 At5g40780 LHT1 C.G. S.X.
0.22 6e-48 192 PtpAffx.152030.1.S1_s_at CA822109 lysine/histidine transporter - 2e-33 At5g40780 LHT1 C.G. S.X.
0.35 1e-42 174 PtpAffx.201013.1.S1_at pmrna1989 lysine/histidine transporter - 1e-21 At5g40780 LHT1 C.G. S.X.
0.37 2e-26 121 PtpAffx.208626.1.S1_at pmrna17122 lysine/histidine transporter - 5e-20 At5g40780 LHT1 C.G. S.X.
0.31 4e-21 103 PtpAffx.208250.1.S1_at pmrna16421 lysine/histidine transporter - 1e-14 At1g24400 LHT2 (LYSINE HISTIDINE TRANSPORTER 2) C.G. S.X.
0.33 2e-11 71 PtpAffx.201014.1.S1_at pmrna1991 lysine/histidine transporter - 5e-17 At1g67640 lysine and histidine specific transporter, putative C.G. S.X.
0.06 1e-3 46 PtpAffx.42238.1.A1_s_at BP933309 lysine/histidine transporter - 6e-6 At1g48640 lysine and histidine specific transporter, putative C.G. S.X.
0.05 4e-3 44 PtpAffx.208967.1.S1_s_at pmrna17773 lysine/histidine transporter - 1e-11 At1g25530 lysine and histidine specific transporter, putative C.G. S.X.
0.01 6e-2 40 PtpAffx.224233.1.S1_s_at pmrna42601 amino acid permease - 8e-17 At5g09220 AAP2 (AMINO ACID PERMEASE 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.32 9e-28 125 Arabidopsis thaliana At5g40780 834078 LHT1 Encodes LHT1 (lysine histidine transporter), a high-affinity transporter for cellular amino acid uptake in both root epidermis and leaf mesophyll. - - - C.G. S.X.
0.13 4e-12 73 Glycine max GmaAffx.46129.1.S1_at BI892562 - - 5e-6 At5g40780 LHT1 C.G. S.X.
0.05 1e+0 34 Hordeum vulgare Contig15915_at Contig15915 - - 2e-3 At1g24400 LHT2 (LYSINE HISTIDINE TRANSPORTER 2) C.G. S.X.
0.20 2e-14 81 Oryza sativa Os08g0127100 AK065217.1 - Lysine and histidine specific transporter 3e-19 At5g40780 LHT1 C.G. S.X.
0.13 3e-6 54 Triticum aestivum Ta.12339.1.S1_s_at BT009250.1 - - 5e-15 At1g24400 LHT2 (LYSINE HISTIDINE TRANSPORTER 2) C.G. S.X.
0.23 4e-24 111 Vitis vinifera 1617470_s_at BQ797931 similar to LHT1 (LYSINE HISTIDINE TRANSPORTER 1); amino acid transmembrane transporter - 6e-11 At1g48640 lysine and histidine specific transporter, putative C.G. S.X.
0.13 1e-3 44 Zea mays Zm.15307.1.A1_at CF014037 - - 2e-11 At1g24400 LHT2 (LYSINE HISTIDINE TRANSPORTER 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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