CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.212775.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 86.0 PtpAffx.212775.1.S1_at pmrna25002 hypothetical protein - 2e-16 At5g62810 PEX14 S.X. H.G.
0.50 78.6 Ptp.7722.1.S1_s_at DN498825 hypothetical protein - 1e+0 At1g34560 unknown protein S.X. H.G.
0.50 78.6 PtpAffx.203068.1.S1_at pmrna6074 hypothetical protein - 3e-14 At5g66150 glycosyl hydrolase family 38 protein S.X. H.G.
0.44 71.9 PtpAffx.211282.1.S1_at pmrna22129 hypothetical protein - 9e-1 At5g56550 OXS3 (OXIDATIVE STRESS 3) S.X. H.G.
0.36 61.6 PtpAffx.249.197.A1_a_at CV262428 hypothetical protein - 2e-35 At5g04740 ACT domain-containing protein S.X. H.G.
0.17 29.1 PtpAffx.200279.1.S1_s_at pmrna555 hypothetical protein - 2e-50 At5g47860 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.7 97.3 GSM244436 Mmd infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.3 95.8 GSM244434 Mlp infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.0 95.3 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.9 95.1 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.6 94.5 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.5 94.3 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.5 94.3 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.5 94.3 GSM244432 non infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2 93.5 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7 91.8 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.90 0 1665 PtpAffx.210567.1.S1_s_at pmrna20729 hypothetical protein - 8e-10 At5g62810 PEX14 C.G. S.X.
0.90 0 1665 PtpAffx.210567.1.S1_at pmrna20729 hypothetical protein - 8e-10 At5g62810 PEX14 C.G. S.X.
0.02 4e-3 44 PtpAffx.44202.1.A1_at CV241343 - - 2e-2 At5g46780 VQ motif-containing protein C.G. S.X.
0.02 2e-2 42 Ptp.4200.1.S1_s_at CV278991 hypothetical protein - 3e-73 At5g64040 PSAN C.G. S.X.
0.02 6e-2 40 PtpAffx.215822.1.S1_s_at pmrna30235 hypothetical protein - 1e-8 At4g34000 ABF3 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3) C.G. S.X.
0.02 6e-2 40 PtpAffx.215822.1.S1_at pmrna30235 hypothetical protein - 1e-8 At4g34000 ABF3 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3) C.G. S.X.
0.02 3e-1 38 PtpAffx.210669.1.S1_x_at pmrna20922 - - 1e-22 At5g50740 metal ion binding C.G. S.X.
0.02 3e-1 38 PtpAffx.210669.1.S1_at pmrna20922 - - 1e-22 At5g50740 metal ion binding C.G. S.X.
0.02 3e-1 38 PtpAffx.208222.1.S1_at pmrna16366 hypothetical protein - 1e-13 At3g24310 MYB305 (myb domain protein 305) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-16 87 Arabidopsis thaliana At5g62810 836402 PEX14 mutant has a defect in the intracellular transport of thiolase from the cytosol to glyoxysomes (formerly known as ped2) - - - C.G. S.X.
0.14 9e-32 139 Glycine max GmaAffx.78321.1.S1_at BM309498 - - 1e+0 At5g62810 PEX14 C.G. S.X.
0.03 3e-1 36 Hordeum vulgare Contig26118_s_at Contig26118 - - 1e+0 At5g36280 - C.G. S.X.
0.03 4e-1 38 Oryza sativa OsAffx.31688.1.S1_at - - - 0 C.G. S.X.
0.03 8e-1 36 Triticum aestivum TaAffx.131379.1.A1_at CK198174 - - 1e+0 At1g66410 CAM4 (calmodulin 4) C.G. S.X.
0.24 3e-34 145 Vitis vinifera 1618699_at CB913495 - - 4e-5 At5g62810 PEX14 C.G. S.X.
0.02 2e-2 40 Zea mays Zm.5038.2.A1_at AY112323.1 ras-related protein RGP2 - 1e+0 At4g19630 heat shock factor protein-related / heat shock transcription factor-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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