Gene omics information

Query gene ID	PtpAffx.212676.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.212676.1.S1_at	pmrna24793	hypothetical protein	-	5e+0	Atmg00970	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.719.1.A1_at	CV270015	hypothetical protein	-	2e-8	At5g42980	ATTRX3 (THIOREDOXIN 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.206073.1.S1_at	pmrna12036	-	-	9e-9	At3g57050	CBL (cystathionine beta-lyase)	S.X.	H.G.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.209952.1.S1_at	pmrna19626	NAC domain protein, IPR003441	-	7e-38	At3g15170	CUC1 (CUP-SHAPED COTYLEDON1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.112600.1.A1_at	DN491684	hypothetical protein	-	2e+0	At1g52470	hydrolase	S.X.	H.G.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.201989.1.S1_s_at	pmrna3968	hypothetical protein	-	4e-1	At2g43640	signal recognition particle 14 kDa family protein / SRP14 family protein	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.1	99.4	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
13.0	99.4	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
10.4	99.0	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.9	97.4	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.4	95.9	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.4	95.9	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9	95.1	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.4	94.0	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1	93.2	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1249	PtpAffx.212676.1.S1_s_at	pmrna24793	hypothetical protein	-	5e+0	Atmg00970	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.87	0	1156	PtpAffx.212679.1.S1_at	pmrna24796	hypothetical protein	-	2e+0	At5g39620	AtRABG1 (Arabidopsis Rab GTPase homolog G1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.79	0	827	PtpAffx.212677.1.S1_at	pmrna24794	hypothetical protein	-	1e+0	At5g39620	AtRABG1 (Arabidopsis Rab GTPase homolog G1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	2e-18	93	PtpAffx.135690.1.S1_at	CK105850	hypothetical protein	-	1e+0	At4g18940	cyclic phosphodiesterase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.23723.3.S1_a_at	CX175663	hypothetical protein	-	5e-7	At3g63140	CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA)	C.G.	S.X.	Please selecteFP Browser (expression)
0.00	2e+0	34	PtpAffx.222227.1.S1_at	pmrna39502	hypothetical protein	-	5e-29	At1g67120	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e+0	32	PtpAffx.97461.1.S1_at	DN492311	-	-	7e-1	At1g59720	CRR28 (CHLORORESPIRATORY REDUCTION28)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e+0	32	PtpAffx.6547.1.S1_at	CV243522	hypothetical protein	-	3e-55	At5g58030	transport protein particle (TRAPP) component Bet3 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e+0	32	PtpAffx.38925.1.S1_at	DN493486	-	-	5e+0	At3g60690	auxin-responsive family protein	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	Atmg00970	-	-	hypothetical protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	GmaAffx.88329.2.S1_at	CA799718	-	-	2e-1	At5g39320	UDP-glucose 6-dehydrogenase, putative	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig23772_s_at	Contig23772	-	-	4e+0	At5g58200	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	OsAffx.7184.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Triticum aestivum	Ta.2786.1.S1_at	AF364099.1	cystatin	-	1e+0	At4g29980	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1618180_at	BQ798119	-	-	6e+0	At5g47060	senescence-associated protein-related	C.G.	S.X.	Please select
0.03	8e+0	30	Zea mays	ZmAffx.260.1.S1_at	AI670365	-	-	8e-1	At3g08560	VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage