CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.212583.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 87.0 PtpAffx.212583.1.S1_at pmrna24652 hypothetical protein - 1e-10 At5g24260 prolyl oligopeptidase family protein S.X. H.G.
0.55 82.2 PtpAffx.217260.1.S1_s_at pmrna32449 hypothetical protein - 2e-97 At2g07360 SH3 domain-containing protein S.X. H.G.
0.53 80.5 PtpAffx.202165.1.S1_at pmrna4331 hypothetical protein - 1e-35 At3g60860 guanine nucleotide exchange family protein S.X. H.G.
0.46 73.7 PtpAffx.159171.1.S1_at CA821479 hypothetical protein - 2e-158 At1g79990 protein binding / structural molecule S.X. H.G.
0.40 67.0 PtpAffx.40088.1.A1_at CA927295 - - 6e-58 At3g50590 nucleotide binding S.X. H.G.
0.27 47.1 PtpAffx.157141.1.S1_s_at CK106059 hypothetical protein - 5e-31 At1g34130 STT3B (staurosporin and temperature sensitive 3-like b) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.4 97.7 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.1 97.6 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.3 96.9 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.2 96.8 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.9 96.5 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.5 96.1 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.83 0 845 PtpAffx.210277.1.S1_at pmrna20215 hypothetical protein - 4e-13 At5g24260 prolyl oligopeptidase family protein C.G. S.X.
0.02 1e-1 38 PtpAffx.204603.1.S1_at pmrna9040 hypothetical protein - 4e-49 At4g36490 SFH12 (SEC14-LIKE 12) C.G. S.X.
0.03 5e-1 36 PtpAffx.9467.1.S1_at BU876861 amino acid transporter - 2e-1 At4g31700 RPS6 (RIBOSOMAL PROTEIN S6) C.G. S.X.
0.01 5e-1 36 PtpAffx.224721.1.S1_s_at pmrna43533 hypothetical protein - 1e-6 At1g11330 S-locus lectin protein kinase family protein C.G. S.X.
0.01 5e-1 36 PtpAffx.224721.1.S1_at pmrna43533 hypothetical protein - 1e-6 At1g11330 S-locus lectin protein kinase family protein C.G. S.X.
0.03 5e-1 36 PtpAffx.135664.1.S1_at BU829394 - - 5e+0 At4g34590 GBF6 (G-BOX BINDING FACTOR 6) C.G. S.X.
0.02 5e-1 36 PtpAffx.129726.1.S1_a_at CV263013 hypothetical protein - 2e-34 At1g19140 - C.G. S.X.
0.03 5e-1 36 PtpAffx.129726.2.S1_at CV269064 - - 2e-9 At1g19140 - C.G. S.X.
0.01 2e+0 34 PtpAffx.211955.1.S1_at pmrna23473 hypothetical protein - 1e-19 At4g12750 sequence-specific DNA binding / transcription factor C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-10 67 Arabidopsis thaliana At5g24260 832493 prolyl oligopeptidase family protein F:serine-type peptidase activity;P:proteolysis;C:membrane;BOMFAP - - - C.G. S.X.
0.06 8e-3 42 Glycine max GmaAffx.91237.1.S1_at CF806962 - - 4e-6 At5g24260 prolyl oligopeptidase family protein C.G. S.X.
0.04 3e+0 32 Hordeum vulgare HV_CEa0003J19r2_at HV_CEa0003J19r2 - - 4e+0 At5g11120 unknown protein C.G. S.X.
0.04 3e+0 34 Oryza sativa OsAffx.18325.1.S1_at - - - 0 C.G. S.X.
0.04 4e-1 36 Triticum aestivum TaAffx.29235.1.S1_at CA647472 - - 3e+0 At4g13160 unknown protein C.G. S.X.
0.04 2e+0 32 Vitis vinifera 1620897_at CF603365 similar to F-box-containing protein 2 - 3e-4 At1g06110 SKIP16 (SKP1/ASK-interacting protein 16) C.G. S.X.
0.03 2e+0 32 Zea mays ZmAffx.1281.1.S1_s_at 11990232-69 - - 1e-55 Atcg01280 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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