CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.212573.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.212573.1.S1_at pmrna24632 hypothetical protein - 2e-40 At5g53050 hydrolase, alpha/beta fold family protein S.X. H.G.
0.83 97.0 PtpAffx.50176.2.S1_a_at CV256175 hypothetical protein - 1e-16 At2g26830 emb1187 (embryo defective 1187) S.X. H.G.
0.73 93.6 PtpAffx.152322.1.A1_at DN487182 - - 4e-35 At2g26830 emb1187 (embryo defective 1187) S.X. H.G.
0.60 86.0 Ptp.8056.1.S1_at DN498527 hypothetical protein - 1e-7 At5g64300 ATGCH S.X. H.G.
0.55 82.2 PtpAffx.149678.1.A1_at AJ771832 hypothetical protein - 3e-50 At5g64300 ATGCH S.X. H.G.
0.50 78.6 PtpAffx.210312.1.S1_at pmrna20295 CPK related kinase 4 - 1e-18 At5g24430 calcium-dependent protein kinase, putative / CDPK, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.4 99.9 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.5 97.8 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.4 95.9 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 1e-123 444 PtpAffx.57003.1.A1_at CV242477 hypothetical protein - 4e-1 At5g01430 Got1-like family protein C.G. S.X.
0.28 9e-47 188 PtpAffx.62474.1.A1_at CV278609 hypothetical protein - 6e+0 At3g03290 universal stress protein (USP) family protein C.G. S.X.
0.01 2e-1 38 PtpAffx.214544.1.S1_at pmrna28262 hypothetical protein - 8e-1 At4g02800 unknown protein C.G. S.X.
0.03 2e-1 38 PtpAffx.205921.1.S1_x_at pmrna11749 hypothetical protein - 1e-1 At3g50580 unknown protein C.G. S.X.
0.03 2e-1 38 PtpAffx.205921.1.S1_at pmrna11749 hypothetical protein - 1e-1 At3g50580 unknown protein C.G. S.X.
0.01 2e-1 38 PtpAffx.11516.2.A1_at CV268353 hypothetical protein - 2e-149 At5g42020 BIP2 C.G. S.X.
0.02 8e-1 36 PtpAffx.81999.1.A1_at CV232658 hypothetical protein - 1e-4 At5g55130 CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5) C.G. S.X.
0.02 8e-1 36 PtpAffx.67405.1.S1_at DN500409 hypothetical protein - 1e-7 At1g73930 unknown protein C.G. S.X.
0.01 8e-1 36 PtpAffx.222783.1.S1_s_at pmrna40432 hypothetical protein - 2e+0 At5g52960 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 2e-40 167 Arabidopsis thaliana At5g53050 835385 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOMPFAV - - - C.G. S.X.
0.13 2e-17 91 Glycine max GmaAffx.48853.1.S1_at BM177313 - - 4e-12 At5g53050 hydrolase, alpha/beta fold family protein C.G. S.X.
0.03 1e-3 44 Hordeum vulgare Contig5383_s_at Contig5383 - - 1e-3 At5g53050 hydrolase, alpha/beta fold family protein C.G. S.X.
0.15 2e-17 91 Oryza sativa Os05g0542200 AK071306.1 - Epoxide hydrolase family protein 7e-2 At5g53050 hydrolase, alpha/beta fold family protein C.G. S.X.
0.11 3e-3 44 Triticum aestivum Ta.5713.1.S1_at CK159205 - - 2e-2 At5g53050 hydrolase, alpha/beta fold family protein C.G. S.X.
0.40 2e-84 311 Vitis vinifera 1621789_s_at CF209826 hypothetical protein LOC100255632 - 6e-16 At5g53050 hydrolase, alpha/beta fold family protein C.G. S.X.
0.02 2e-2 40 Zea mays Zm.1693.1.A1_at BM382165 - - 4e-3 At3g55670 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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