CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.212416.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.212416.1.S1_at pmrna24321 hypothetical protein - 5e-1 At2g43350 ATGPX3 (GLUTATHIONE PEROXIDASE 3) S.X. H.G.
0.67 91.1 PtpAffx.212416.1.S1_x_at pmrna24321 hypothetical protein - 5e-1 At2g43350 ATGPX3 (GLUTATHIONE PEROXIDASE 3) S.X. H.G.
0.63 88.1 PtpAffx.127059.1.A1_at CV258719 hypothetical protein - 1e-4 At1g66270 BGLU21 S.X. H.G.
0.56 83.9 PtpAffx.162331.2.S1_at AJ780051 - - 1e+0 At4g11640 ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE) S.X. H.G.
0.55 82.2 PtpAffx.200185.1.S1_s_at pmrna342 hypothetical protein - 8e-4 At2g44450 BGLU15 (BETA GLUCOSIDASE 15) S.X. H.G.
0.36 61.6 PtpAffx.210259.1.S1_s_at pmrna20190 hypothetical protein - 1e-2 At5g62950 catalytic/ nucleotide binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
60.6 100.0 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
21.7 99.8 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
8.1 98.5 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.4 82.3 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
0.5 63.3 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
0.3 55.0 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
0.2 49.7 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
0.1 42.9 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
0.1 42.9 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 1e-144 511 PtpAffx.212416.1.S1_x_at pmrna24321 hypothetical protein - 5e-1 At2g43350 ATGPX3 (GLUTATHIONE PEROXIDASE 3) C.G. S.X.
0.01 2e-1 36 PtpAffx.220065.1.S1_s_at pmrna36352 multidrug/pheromone exporter, MDR family, ABC transporter family - 4e-32 At1g10680 PGP10 (P-GLYCOPROTEIN 10) C.G. S.X.
0.03 2e-1 36 PtpAffx.204949.1.S1_x_at pmrna9794 hypothetical protein - 1e-20 At1g07480 transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L) C.G. S.X.
0.03 2e-1 36 PtpAffx.204949.1.S1_at pmrna9794 hypothetical protein - 1e-20 At1g07480 transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L) C.G. S.X.
0.01 2e-1 36 PtpAffx.203094.1.S1_at pmrna6121 multidrug/pheromone exporter, MDR family, ABC transporter family - 2e-28 At4g25960 PGP2 (P-GLYCOPROTEIN 2) C.G. S.X.
0.02 7e-1 34 PtpAffx.29151.1.S1_at BU809457 hypothetical protein - 5e-2 At1g49660 AtCXE5 (Arabidopsis thaliana carboxyesterase 5) C.G. S.X.
0.02 7e-1 34 PtpAffx.29151.1.S1_a_at BU809457 hypothetical protein - 5e-2 At1g49660 AtCXE5 (Arabidopsis thaliana carboxyesterase 5) C.G. S.X.
0.03 7e-1 34 Ptp.6898.1.A1_at CV258519 hypothetical protein - 6e-1 At3g24110 calcium-binding EF hand family protein C.G. S.X.
0.04 3e+0 32 PtpAffx.67807.1.A1_at BP934419 hypothetical protein - 1e+0 At4g33000 CBL10 (CALCINEURIN B-LIKE 10) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-1 34 Arabidopsis thaliana At2g43350 818936 ATGPX3 (GLUTATHIONE PEROXIDASE 3) Glutathione peroxidase. Functions as both a redox transducer and a scavenger in abscisic acid and drought stress responses. Interacts with ABI2 and ABI1. - - - C.G. S.X.
0.06 3e+0 32 Glycine max GmaAffx.27651.1.S1_at BI470909 - - 3e+0 At2g15670 - C.G. S.X.
0.04 4e+0 30 Hordeum vulgare Contig21462_at Contig21462 - - 1e+1 At4g37682 - C.G. S.X.
0.07 4e+0 32 Oryza sativa OsAffx.23991.1.S1_at - - - 0 C.G. S.X.
0.04 8e+0 30 Triticum aestivum TaAffx.88677.1.S1_at BG904641 - - 4e+0 At5g40220 AGL43 (AGAMOUS-LIKE 43) C.G. S.X.
0.03 2e+0 30 Vitis vinifera 1614961_at CB971768 hypothetical protein LOC100257797 - 2e+0 At5g66660 unknown protein C.G. S.X.
0.04 3e+0 30 Zea mays Zm.5885.1.A1_at CF634075 hypothetical protein LOC100278710 - 1e+0 At5g51860 MADS-box protein (AGL72) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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