CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.212360.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.212360.1.S1_at pmrna24227 hypothetical protein - 5e-102 At1g22620 ATSAC1 (suppressor of actin 1) S.X. H.G.
0.73 93.6 PtpAffx.43105.1.A1_a_at CV256606 hypothetical protein - 3e-2 At5g66730 zinc finger (C2H2 type) family protein S.X. H.G.
0.60 86.0 PtpAffx.40192.1.A1_a_at CV264380 hypothetical protein - 2e+0 At3g17020 universal stress protein (USP) family protein S.X. H.G.
0.57 84.2 PtpAffx.49806.1.A1_at CV270678 hypothetical protein - 1e-29 At1g73950 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.22 38.3 PtpAffx.28713.1.A1_at CV258396 hypothetical protein - 1e-5 At4g12570 UPL5 (UBIQUITIN PROTEIN LIGASE 5) S.X. H.G.
0.17 29.1 PtpAffx.154171.1.A1_at CV250301 hypothetical protein - 4e-1 At1g55805 BolA-like family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.0 97.5 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
5.0 96.6 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.8 96.4 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.8 96.4 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7 91.8 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.88 0 3576 PtpAffx.221321.1.S1_at pmrna38126 hypothetical protein - 8e-73 At1g22620 ATSAC1 (suppressor of actin 1) C.G. S.X.
0.61 0 1328 PtpAffx.7225.1.S1_at CF234583 hypothetical protein - 1e-51 At1g22620 ATSAC1 (suppressor of actin 1) C.G. S.X.
0.61 0 1328 PtpAffx.7225.1.S1_s_at CF234583 hypothetical protein - 1e-51 At1g22620 ATSAC1 (suppressor of actin 1) C.G. S.X.
0.34 0 914 PtpAffx.222870.1.S1_s_at pmrna40569 hypothetical protein - 1e-19 At1g22620 ATSAC1 (suppressor of actin 1) C.G. S.X.
0.42 0 898 PtpAffx.211267.1.S1_at pmrna22105 hypothetical protein - 2e-25 At1g22620 ATSAC1 (suppressor of actin 1) C.G. S.X.
0.42 0 898 PtpAffx.211267.1.S1_x_at pmrna22105 hypothetical protein - 2e-25 At1g22620 ATSAC1 (suppressor of actin 1) C.G. S.X.
0.07 8e-37 157 Ptp.2451.2.S1_at CF229175 - - 9e-1 At2g03770 sulfotransferase family protein C.G. S.X.
0.01 6e-7 57 PtpAffx.213633.1.S1_at pmrna26627 hypothetical protein - 5e-30 At3g51830 ATG5 C.G. S.X.
0.05 4e-5 52 PtpAffx.217047.1.S1_at pmrna32168 hypothetical protein - 1e-30 At3g14205 phosphoinositide phosphatase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.48 5e-102 373 Arabidopsis thaliana At1g22620 838868 ATSAC1 (suppressor of actin 1) SAC domain phosphoinositide (3,5)P2 phosphatase. Colocalized with a Golgi Marker. Required for normal cell morphogenesis, cell wall synthesis, and actin organization. - - - C.G. S.X.
0.17 7e-25 117 Glycine max GmaAffx.14968.1.S1_at BG405489 - - 7e-18 At1g22620 ATSAC1 (suppressor of actin 1) C.G. S.X.
0.16 3e-37 157 Hordeum vulgare Contig10720_at Contig10720 - - 1e-39 At1g22620 ATSAC1 (suppressor of actin 1) C.G. S.X.
0.19 1e-21 107 Oryza sativa Os08g0109100 AK121887.1 - SAC domain protein 1 (FIG4-like protein AtFIG4) 2e-36 At1g22620 ATSAC1 (suppressor of actin 1) C.G. S.X.
0.13 4e-10 67 Triticum aestivum Ta.5802.1.S1_at BQ801997 - - 7e-21 At1g22620 ATSAC1 (suppressor of actin 1) C.G. S.X.
0.02 7e-3 42 Vitis vinifera 1622238_at CF609236 hypothetical protein LOC100242326 - 4e-14 At3g14205 phosphoinositide phosphatase family protein C.G. S.X.
0.03 2e-10 67 Zea mays Zm.9539.1.A1_at AY105652.1 - - 7e-8 At3g14205 phosphoinositide phosphatase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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