Gene omics information

Query gene ID PtpAffx.212360.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9199.2PtpAffx.212360.1.S1_atpmrna24227hypothetical protein-5e-102At1g22620ATSAC1 (suppressor of actin 1)S.X.H.G.
0.7393.6PtpAffx.43105.1.A1_a_atCV256606hypothetical protein-3e-2At5g66730zinc finger (C2H2 type) family proteinS.X.H.G.
0.6086.0PtpAffx.40192.1.A1_a_atCV264380hypothetical protein-2e+0At3g17020universal stress protein (USP) family proteinS.X.H.G.
0.5784.2PtpAffx.49806.1.A1_atCV270678hypothetical protein-1e-29At1g73950zinc finger (C3HC4-type RING finger) family proteinS.X.H.G.
0.2238.3PtpAffx.28713.1.A1_atCV258396hypothetical protein-1e-5At4g12570UPL5 (UBIQUITIN PROTEIN LIGASE 5)S.X.H.G.
0.1729.1PtpAffx.154171.1.A1_atCV250301hypothetical protein-4e-1At1g55805BolA-like family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
6.097.5GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue series
5.096.6GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue series
4.896.4GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue series
4.896.4GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue series
4.095.3GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue series
3.794.7GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
3.393.7GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue series
3.293.5GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue series
3.293.5GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.791.8GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.8803576PtpAffx.221321.1.S1_atpmrna38126hypothetical protein-8e-73At1g22620ATSAC1 (suppressor of actin 1)C.G.S.X.
0.6101328PtpAffx.7225.1.S1_atCF234583hypothetical protein-1e-51At1g22620ATSAC1 (suppressor of actin 1)C.G.S.X.
0.6101328PtpAffx.7225.1.S1_s_atCF234583hypothetical protein-1e-51At1g22620ATSAC1 (suppressor of actin 1)C.G.S.X.
0.340914PtpAffx.222870.1.S1_s_atpmrna40569hypothetical protein-1e-19At1g22620ATSAC1 (suppressor of actin 1)C.G.S.X.
0.420898PtpAffx.211267.1.S1_atpmrna22105hypothetical protein-2e-25At1g22620ATSAC1 (suppressor of actin 1)C.G.S.X.
0.420898PtpAffx.211267.1.S1_x_atpmrna22105hypothetical protein-2e-25At1g22620ATSAC1 (suppressor of actin 1)C.G.S.X.
0.078e-37157Ptp.2451.2.S1_atCF229175--9e-1At2g03770sulfotransferase family proteinC.G.S.X.
0.016e-757PtpAffx.213633.1.S1_atpmrna26627hypothetical protein-5e-30At3g51830ATG5C.G.S.X.
0.054e-552PtpAffx.217047.1.S1_atpmrna32168hypothetical protein-1e-30At3g14205phosphoinositide phosphatase family proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.485e-102373Arabidopsis thalianaAt1g22620838868ATSAC1 (suppressor of actin 1)SAC domain phosphoinositide (3,5)P2 phosphatase. Colocalized with a Golgi Marker. Required for normal cell morphogenesis, cell wall synthesis, and actin organization.---C.G.S.X.
0.177e-25117Glycine maxGmaAffx.14968.1.S1_atBG405489--7e-18At1g22620ATSAC1 (suppressor of actin 1)C.G.S.X.
0.163e-37157Hordeum vulgareContig10720_atContig10720--1e-39At1g22620ATSAC1 (suppressor of actin 1)C.G.S.X.
0.191e-21107Oryza sativaOs08g0109100AK121887.1-SAC domain protein 1 (FIG4-like protein AtFIG4)2e-36At1g22620ATSAC1 (suppressor of actin 1)C.G.S.X.
0.134e-1067Triticum aestivumTa.5802.1.S1_atBQ801997--7e-21At1g22620ATSAC1 (suppressor of actin 1)C.G.S.X.
0.027e-342Vitis vinifera1622238_atCF609236hypothetical protein LOC100242326-4e-14At3g14205phosphoinositide phosphatase family proteinC.G.S.X.
0.032e-1067Zea maysZm.9539.1.A1_atAY105652.1--7e-8At3g14205phosphoinositide phosphatase family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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