CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.212151.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 71.9 PtpAffx.212151.1.S1_at pmrna23828 hypothetical protein - 8e-21 At1g08590 CLAVATA1 receptor kinase (CLV1) S.X. H.G.
0.11 18.1 PtpAffx.56200.1.A1_at CV273917 - - 3e-1 At2g11910 unknown protein S.X. H.G.
0.09 14.6 PtpAffx.216586.1.S1_at pmrna31463 hypothetical protein - 5e+0 At5g43050 unknown protein S.X. H.G.
0.07 11.6 PtpAffx.36879.1.A1_at CV275101 hypothetical protein - 2e-1 At3g49120 PRXCB (PEROXIDASE CB) S.X. H.G.
0.02 3.6 PtpAffx.202726.1.S1_at pmrna5448 hypothetical protein - 8e-21 At4g28650 leucine-rich repeat transmembrane protein kinase, putative S.X. H.G.
0.02 3.6 PtpAffx.211700.1.S1_s_at pmrna22932 hypothetical protein - 3e+0 At4g30480 tetratricopeptide repeat (TPR)-containing protein S.X. H.G.
0.02 3.6 PtpAffx.204788.1.S1_at pmrna9436 hypothetical protein - 3e-22 At2g38300 DNA binding / transcription factor S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.2 99.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
8.0 98.4 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.8 98.4 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.4 97.7 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.6 97.2 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.4 97.0 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.2 96.8 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.92 0 4010 PtpAffx.211030.1.S1_at pmrna21669 hypothetical protein - 1e-25 At1g08590 CLAVATA1 receptor kinase (CLV1) C.G. S.X.
0.25 1e-26 123 PtpAffx.202726.1.S1_at pmrna5448 hypothetical protein - 8e-21 At4g28650 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.01 2e-10 69 PtpAffx.211039.1.S1_at pmrna21687 hypothetical protein - 1e-35 At5g63930 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.03 6e-7 57 PtpAffx.102491.1.A1_at CK097195 hypothetical protein - 3e-17 At1g75820 CLV1 (CLAVATA 1) C.G. S.X.
0.04 6e-7 57 Ptp.5061.1.S1_s_at BU884030 hypothetical protein - 2e-15 At2g33170 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.03 4e-5 52 PtpAffx.64361.1.S1_s_at CV228112 hypothetical protein - 5e-63 At5g65700 BAM1 (BARELY ANY MERISTEM 1) C.G. S.X.
0.03 4e-5 52 PtpAffx.207429.1.S1_at pmrna14744 hypothetical protein - 7e-80 At5g65700 BAM1 (BARELY ANY MERISTEM 1) C.G. S.X.
0.01 1e-4 50 PtpAffx.56736.1.A1_at CV254194 hypothetical protein - 6e-9 At2g02220 PSKR1 (PHYTOSULFOKIN RECEPTOR 1) C.G. S.X.
0.01 6e-4 48 PtpAffx.203444.1.S1_at pmrna6862 hypothetical protein - 5e-44 At3g24240 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 8e-21 103 Arabidopsis thaliana At1g08590 837381 CLAVATA1 receptor kinase (CLV1) similar to CLV1-like leucine rich repeat transmembrane receptor-like protein kinase (Ipomoea nil) (U77888) - - - C.G. S.X.
0.07 4e-20 101 Glycine max GmaAffx.32289.1.S1_at BI943956 - - 8e-10 At1g08590 CLAVATA1 receptor kinase (CLV1) C.G. S.X.
0.03 1e-2 42 Hordeum vulgare Contig19894_at Contig19894 - - 9e-1 At2g35640 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.04 6e-11 71 Oryza sativa Os04g0506100 AK059053.1 - Receptor-like protein kinase 5e-21 At5g63930 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.03 3e-5 52 Triticum aestivum Ta.24642.2.S1_a_at CA617567 - - 5e-12 At3g62220 serine/threonine protein kinase, putative C.G. S.X.
0.03 3e-8 59 Vitis vinifera 1607524_at CF372095 similar to receptor-like protein kinase 2 - 2e-19 At5g65700 BAM1 (BARELY ANY MERISTEM 1) C.G. S.X.
0.02 1e-5 52 Zea mays Zm.721.1.A1_at BM267834 Salt-inducible putative protein serine/threonine/tyrosine kinase - 1e-33 At1g06700 serine/threonine protein kinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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