CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.212132.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.212132.1.S1_s_at pmrna23792 hypothetical protein - 3e-1 At1g69170 squamosa promoter-binding protein-like 6 (SPL6) S.X. H.G.
0.57 84.2 PtpAffx.62585.1.A1_at CV273954 - - 5e-3 At4g20410 GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN) S.X. H.G.
0.53 80.5 PtpAffx.192.1.S1_at DN487464 hypothetical protein - 2e+1 At5g60190 Ulp1 protease family protein S.X. H.G.
0.44 71.9 Ptp.3333.2.A1_at CX658805 - - 2e-12 At1g63940 monodehydroascorbate reductase, putative S.X. H.G.
0.36 61.6 Ptp.6239.1.S1_at DN490661 hypothetical protein - 4e-8 At1g55020 LOX1 S.X. H.G.
0.35 59.7 PtpAffx.208712.1.S1_at pmrna17276 high affinity inorganic phosphate transporter - 2e-11 At5g43350 PHT1 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.4 99.8 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
20.9 99.8 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
19.9 99.7 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
14.8 99.5 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.3 81.0 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.9 74.2 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.7 69.4 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.7 69.4 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 2e-21 103 PtpAffx.224647.1.S1_at pmrna43392 hypothetical protein - 5e-1 At3g11480 BSMT1 C.G. S.X.
0.10 5e-4 46 PtpAffx.224604.1.S1_at pmrna43290 hypothetical protein - 5e-4 At5g04370 NAMT1 C.G. S.X.
0.07 5e-4 46 PtpAffx.224283.1.S1_at pmrna42689 hypothetical protein - 5e-4 At3g44870 S-adenosyl-L-methionine:carboxyl methyltransferase family protein C.G. S.X.
0.07 5e-4 46 PtpAffx.224283.1.S1_s_at pmrna42689 hypothetical protein - 5e-4 At3g44870 S-adenosyl-L-methionine:carboxyl methyltransferase family protein C.G. S.X.
0.10 7e-3 42 PtpAffx.224605.1.S1_at pmrna43291 hypothetical protein - 5e-1 At5g37970 S-adenosyl-L-methionine:carboxyl methyltransferase family protein C.G. S.X.
0.03 1e-1 38 PtpAffx.44701.1.S1_at CK096480 hypothetical protein - 4e-4 At5g59950 RNA and export factor-binding protein, putative C.G. S.X.
0.05 1e-1 38 PtpAffx.39846.1.S1_s_at AJ771764 hypothetical protein - 5e-4 At5g38100 methyltransferase-related C.G. S.X.
0.05 1e-1 38 PtpAffx.225400.1.S1_at pmrna44721 hypothetical protein - 5e-4 At5g38100 methyltransferase-related C.G. S.X.
0.05 1e-1 38 PtpAffx.224282.1.S1_at pmrna42687 - - 2e-6 At3g44840 S-adenosyl-L-methionine:carboxyl methyltransferase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 36 Arabidopsis thaliana At1g69170 843248 squamosa promoter-binding protein-like 6 (SPL6) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PM - - - C.G. S.X.
0.03 5e-1 36 Glycine max PsAffx.C156000004_at PsAffx.C156000004 - - 6e-2 At1g22890 unknown protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HB01F15r_at HB01F15r - - 1e+1 At2g28480 RNA binding C.G. S.X.
0.04 3e+0 34 Oryza sativa OsAffx.1923.1.S1_at - - - 0 C.G. S.X.
0.03 3e-1 36 Triticum aestivum Ta.22059.2.S1_at BJ235801 - - 4e+0 At3g60810 unknown protein C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1610665_s_at BQ798907 hypothetical protein LOC100253813 - 7e-22 At2g16940 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.02 2e+0 32 Zea mays Zm.7850.1.A1_at BM073474 hypothetical protein LOC100272428 - 1e+0 At4g22190 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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