CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.212130.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 92.6 PtpAffx.212130.1.S1_at pmrna23790 hypothetical protein - 6e-1 At3g13677 unknown protein S.X. H.G.
0.36 61.6 PtpAffx.212130.1.S1_x_at pmrna23790 hypothetical protein - 6e-1 At3g13677 unknown protein S.X. H.G.
0.25 43.6 PtpAffx.222521.1.S1_at pmrna40018 chromatin remodeling complex subunit - 3e+0 At5g43175 basic helix-loop-helix (bHLH) family protein S.X. H.G.
0.19 32.7 PtpAffx.213158.1.S1_at pmrna25746 - - 1e-1 At4g28320 glycosyl hydrolase family 5 protein / cellulase family protein S.X. H.G.
0.15 25.3 PtpAffx.1259.1.S1_s_at CV272573 hypothetical protein - 4e-1 At3g12410 3'-5' exonuclease/ nucleic acid binding S.X. H.G.
0.09 14.6 Ptp.4198.1.S1_at BU827136 hypothetical protein - 3e-1 At5g66570 PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.0 99.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.9 96.5 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.7 96.3 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0 88.0 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 636 PtpAffx.212130.1.S1_x_at pmrna23790 hypothetical protein - 6e-1 At3g13677 unknown protein C.G. S.X.
0.14 3e-31 135 PtpAffx.220851.1.S1_at pmrna37301 hypothetical protein - 7e-9 At3g59990 MAP2B (METHIONINE AMINOPEPTIDASE 2B) C.G. S.X.
0.35 3e-31 135 PtpAffx.210962.1.S1_s_at pmrna21538 hypothetical protein - 3e-2 At5g56600 PRF3 (PROFILIN 3) C.G. S.X.
0.15 1e-27 123 PtpAffx.223154.1.S1_at pmrna41014 hypothetical protein - 5e-3 At1g29160 Dof-type zinc finger domain-containing protein C.G. S.X.
0.23 1e-21 103 PtpAffx.223891.1.S1_x_at pmrna42113 hypothetical protein - 2e-1 At5g54850 unknown protein C.G. S.X.
0.23 1e-21 103 PtpAffx.223891.1.S1_at pmrna42113 hypothetical protein - 2e-1 At5g54850 unknown protein C.G. S.X.
0.40 1e-21 103 PtpAffx.217526.1.S1_x_at pmrna32821 hypothetical protein - 2e-1 At5g54850 unknown protein C.G. S.X.
0.34 1e-21 103 PtpAffx.214998.1.S1_at pmrna28936 hypothetical protein - 3e-1 At5g54850 unknown protein C.G. S.X.
0.24 4e-21 101 PtpAffx.201373.1.S1_at pmrna2710 hypothetical protein - 5e-1 At5g55790 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e-1 34 Arabidopsis thaliana At3g13677 820575 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.05 8e-1 34 Glycine max GmaAffx.46020.1.S1_at BI972315 - - 8e-1 At4g02340 epoxide hydrolase, putative C.G. S.X.
0.05 3e-1 34 Hordeum vulgare Contig4056_at Contig4056 - - 7e-2 At1g64185 lactoylglutathione lyase family protein / glyoxalase I family protein C.G. S.X.
0.03 3e-1 36 Oryza sativa Os09g0565100 9637.m03345 - Peptidase C1A, papain family protein 4e-1 At3g49340 cysteine proteinase, putative C.G. S.X.
0.05 6e-1 34 Triticum aestivum TaAffx.9431.1.S1_at CA599024 - - 2e-2 At5g13470 unknown protein C.G. S.X.
0.04 3e+0 30 Vitis vinifera 1621070_s_at CF511094 hypothetical protein LOC100251552 - 4e+0 At4g23885 unknown protein C.G. S.X.
0.04 1e+0 32 Zea mays ZmAffx.482.1.A1_at AI691285 - - 3e+0 At5g57510 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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