Gene omics information

Query gene ID	PtpAffx.212106.1.S1_at
Gene name	calcium dependent protein kinase 12
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	83.9	PtpAffx.212106.1.S1_at	pmrna23742	calcium dependent protein kinase 12	-	5e-33	At5g23580	CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.692.1.S1_x_at	CX185889	hypothetical protein	-	1e-1	At5g23950	C2 domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.5801.2.S1_a_at	BU836809	hypothetical protein	-	2e+0	At1g24440	protein binding / zinc ion binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.163436.1.S1_s_at	CK107725	hypothetical protein	-	9e-20	At1g31930	XLG3 (extra-large GTP-binding protein 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.115945.1.S1_s_at	CN521589	hypothetical protein	-	5e-2	At4g00355	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.222344.1.S1_s_at	pmrna39692	hypothetical protein	-	4e-27	At1g61010	CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I)	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.2	98.1	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.5	97.8	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.6	97.2	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.1	95.5	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.8	94.9	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	2e-88	327	PtpAffx.212379.1.S1_at	pmrna24257	calcium dependent protein kinase 11	-	2e-63	At4g09570	CPK4	C.G.	S.X.	Please selecteFP Browser (expression)
0.38	2e-26	121	PtpAffx.221300.1.S1_s_at	pmrna38086	calcium dependent protein kinase 11 /// calcium dependent protein kinase 4 /// hypothetical protein	-	3e-63	At4g09570	CPK4	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	8e-17	89	PtpAffx.216325.1.S1_s_at	pmrna31035	calcium dependent protein kinase 11 /// hypothetical protein	-	2e-7	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	1e-9	65	PtpAffx.213379.1.S1_at	pmrna26180	calcium dependent protein kinase 19	-	3e-62	At5g04870	CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	5e-9	63	PtpAffx.210526.1.S1_s_at	pmrna20640	calcium dependent protein kinase 10 /// calcium dependent protein kinase 28	-	2e-149	At1g74740	CPK30 (CALCIUM-DEPENDENT PROTEIN KINASE 30)	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	2e-8	61	PtpAffx.213375.1.S1_at	pmrna26171	calcium dependent protein kinase 20	-	9e-38	At2g38910	CPK20	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-8	61	PtpAffx.206966.1.S1_at	pmrna13809	calcium dependent protein kinase 24	-	1e-27	At2g31500	CPK24	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	3e-7	57	PtpAffx.203676.1.S1_at	pmrna7282	calcium dependent protein kinase 15	-	1e-51	At4g04720	CPK21	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	1e-6	56	PtpAffx.209506.1.S1_at	pmrna18836	calcium dependent protein kinase 1	-	2e-63	At5g04870	CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.46	5e-33	143	Arabidopsis thaliana	At5g23580	832424	CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9)	unique family of enzymes containing a single polypeptide chain with a kinase domain at the amino terminus and a putative calcium-binding EF hands structure at the carboxyl terminus; recombinant protein is fully active and induced by Ca2+	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.53	0	666	Glycine max	Gma.8437.1.S1_at	AY247754.1	Calcium-dependent protein kinase SK5	-	8e-23	At5g23580	CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9)	C.G.	S.X.	Please select
0.26	8e-24	111	Hordeum vulgare	Contig6447_at	Contig6447	-	-	4e-15	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	C.G.	S.X.	Please select
0.29	2e-30	135	Oryza sativa	Os12g0169800	9640.m00650	-	Calcium-dependent protein kinase SK5 (EC 2.7.1.-)(CDPK)	2e-8	At4g09570	CPK4	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	2e-13	77	Triticum aestivum	Ta.6350.3.S1_a_at	BJ235492	calcium-dependent protein kinase /// calcium-dependent protein kinase	-	3e-7	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	C.G.	S.X.	Please select
0.40	1e-154	545	Vitis vinifera	1610635_at	CF214231	similar to calcium-dependent protein kinase	-	2e-12	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	C.G.	S.X.	Please select
0.29	8e-30	131	Zea mays	Zm.6306.1.A1_a_at	AY301062.2	calcium-dependent protein kinase ZmCPK11	-	9e-17	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage