Gene omics information

Query gene ID	PtpAffx.211939.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.86	97.4	PtpAffx.211939.1.S1_s_at	pmrna23444	hypothetical protein	-	1e-37	At2g04280	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.90782.1.S1_s_at	CK091819	hypothetical protein	-	2e+0	At1g06920	OFP4 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.200613.1.S1_at	pmrna1202	hypothetical protein	-	1e-166	At3g16060	kinesin motor family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.3647.1.A1_at	CV230293	hypothetical protein	-	9e-5	At2g26680	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	Ptp.5030.1.A1_x_at	DN485279	hypothetical protein	-	4e-64	At1g77590	LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9)	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.207723.1.S1_s_at	pmrna15345	hypothetical protein	-	8e-76	At2g39750	dehydration-responsive family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.145088.1.A1_at	DN488679	hypothetical protein	-	1e+0	At3g50900	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.5	96.1	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6	94.5	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2	93.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	3878	PtpAffx.211939.1.S1_at	pmrna23444	hypothetical protein	-	1e-37	At2g04280	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.52	0	1649	PtpAffx.9157.1.A1_a_at	CV267842	-	-	2e-38	At2g04280	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-7	59	PtpAffx.203630.1.S1_at	pmrna7191	-	-	7e-23	At4g08810	SUB1	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	1e-7	59	Ptp.6363.1.S1_at	BI784464	-	-	1e-45	At4g08810	SUB1	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-6	56	Ptp.6363.2.S1_at	CK103195	-	-	2e-40	At4g08810	SUB1	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-2	40	PtpAffx.153084.1.A1_at	CV270831	hypothetical protein	-	1e-1	At5g62400	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.65682.3.S1_at	CV238309	-	-	1e-15	At2g24260	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.70114.1.A1_at	CV231521	-	-	7e-8	At4g36870	BLH2 (BEL1-LIKE HOMEODOMAIN 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.224157.1.S1_at	pmrna42430	pleiotropic drug resistance, ABC transporter family protein	-	8e-31	At1g15520	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	1e-37	159	Arabidopsis thaliana	At2g04280	814966	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.31	2e-36	155	Glycine max	Gma.6766.1.S1_at	CD400112	-	-	9e-18	At2g04280	unknown protein	C.G.	S.X.	Please select
0.05	3e-2	40	Hordeum vulgare	Contig7552_at	Contig7552	-	-	1e-5	At2g04280	unknown protein	C.G.	S.X.	Please select
0.09	5e-4	48	Oryza sativa	Os10g0456400	AK101916.1	-	Conserved hypothetical protein	5e+0	At5g23212	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	1e+0	36	Triticum aestivum	Ta.10521.2.S1_x_at	BQ171091	-	-	4e+0	At5g46870	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.41	7e-73	274	Vitis vinifera	1613462_at	CB975578	hypothetical protein LOC100266500	-	4e-32	At2g04280	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zea mays	Zm.5801.1.A1_at	AY111239.1	hypothetical protein LOC100275802	-	6e-3	At5g12470	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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