Gene omics information

Query gene ID PtpAffx.211936.1.S1_x_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6488.4PtpAffx.211936.1.S1_x_atpmrna23439hypothetical protein-3e-38At2g04350long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)S.X.H.G.
0.4471.9Ptp.2049.1.A1_atCV234099--1e+0At1g28170sulfotransferase family proteinS.X.H.G.
0.4067.0PtpAffx.2017.3.S1_a_atCV242885hypothetical protein-3e+0At2g24450FLA3 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 PRECURSOR)S.X.H.G.
0.3661.6PtpAffx.2017.8.A1_a_atCV254914hypothetical protein-4e+0At1g35210unknown proteinS.X.H.G.
0.3661.6PtpAffx.581.1.S1_a_atCV272264hypothetical protein-7e-19At4g09830-S.X.H.G.
0.2238.3PtpAffx.14313.1.S1_atCA932065hypothetical protein-5e-1At2g35850unknown proteinS.X.H.G.
0.2034.6PtpAffx.147937.1.S1_atCK107561hypothetical protein-5e-3At5g43560meprin and TRAF homology domain-containing protein / MATH domain-containing proteinS.X.H.G.
0.1423.5PtpAffx.66631.3.S1_a_atCA821871hypothetical protein-2e-71At5g08500transmembrane CLPTM1 family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
8.798.6GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
7.098.0GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
5.997.4GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
5.597.1GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
3.694.5GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue series
3.694.5GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue series
3.494.0GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue series
3.393.7GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue series
2.892.1GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue series
2.590.9GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue series
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
1.0004659PtpAffx.211936.1.S1_atpmrna23439hypothetical protein-3e-38At2g04350long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)C.G.S.X.
0.5601479PtpAffx.13681.1.S1_s_atCK095815hypothetical protein-9e-12At2g04350long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)C.G.S.X.
0.270765PtpAffx.223077.1.S1_atpmrna40882hypothetical protein-6e-27At2g04350long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)C.G.S.X.
0.205e-96353PtpAffx.13681.2.S1_atCV268082hypothetical protein-1e+1At5g65420CYCD4C.G.S.X.
0.124e-78293PtpAffx.215926.1.S1_atpmrna30400hypothetical protein-3e-17At2g04350long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)C.G.S.X.
0.091e-1069Ptp.5030.1.A1_x_atDN485279hypothetical protein-4e-64At1g77590LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9)C.G.S.X.
0.091e-1069Ptp.5030.1.A1_atDN485279hypothetical protein-4e-64At1g77590LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9)C.G.S.X.
0.011e-140PtpAffx.44092.1.S1_atBU812494hypothetical protein-2e-2At3g13780-C.G.S.X.
0.014e-138PtpAffx.26085.1.S1_atBU884670hypothetical protein-7e-78At5g27600LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.373e-38161Arabidopsis thalianaAt2g04350814974long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)F:long-chain-fatty-acid-CoA ligase activity, catalytic activity;P:fatty acid biosynthetic process, metabolic process;C:endoplasmic reticulum;BOMFPAV---C.G.S.X.
0.231e-32143Glycine maxGma.7624.1.S1_atBU549140--2e-22At2g04350long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)C.G.S.X.
0.177e-1995Hordeum vulgareContig12200_atContig12200--1e-23At2g04350long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)C.G.S.X.
0.255e-29131Oryza sativaOs05g0317200AK100521.1-AMP-dependent synthetase and ligase domaincontaining protein2e-8At1g77590LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9)C.G.S.X.
0.176e-1583Triticum aestivumTa.5876.1.S1_atCK196203--2e-16At2g04350long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)C.G.S.X.
0.141e-22107Vitis vinifera1609291_atCD802258hypothetical protein LOC100252885-2e-14At2g04350long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)C.G.S.X.
0.174e-1479Zea maysZm.8032.1.A1_atAI737866acyl-CoA synthetase long-chain family member 3-2e-14At2g04350long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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