CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.211806.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 84.9 PtpAffx.211806.1.S1_at pmrna23151 hypothetical protein - 2e-37 At2g48120 PAC (PALE CRESS) S.X. H.G.
0.67 91.1 PtpAffx.202114.1.S1_s_at pmrna4230 hypothetical protein - 5e-11 At1g02150 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.50 78.6 PtpAffx.213599.1.S1_at pmrna26557 hypothetical protein - 4e-12 At2g38025 - S.X. H.G.
0.47 74.6 PtpAffx.95698.1.A1_s_at CV235344 hypothetical protein - 2e-8 At1g06190 ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism S.X. H.G.
0.44 71.9 PtpAffx.5366.1.A1_at CV256714 hypothetical protein - 1e-59 At1g11750 CLPP6 S.X. H.G.
0.33 57.5 PtpAffx.4646.1.S1_a_at CV283009 hypothetical protein - 5e-25 At1g33810 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.0 96.6 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7 91.8 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7 91.8 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7 91.8 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 5e-23 109 PtpAffx.202444.1.S1_at pmrna4894 hypothetical protein - 4e-2 At5g14140 zinc finger (C2H2 type) family protein C.G. S.X.
0.02 1e-2 42 PtpAffx.4077.1.S1_at CX655700 hypothetical protein - 3e-3 At4g33565 protein binding / zinc ion binding C.G. S.X.
0.03 1e-2 42 PtpAffx.200358.1.S1_at pmrna717 hypothetical protein - 6e-8 At4g10920 KELP C.G. S.X.
0.02 1e-2 42 Ptp.6708.1.S1_at CV257169 hypothetical protein - 2e-31 At1g42960 - C.G. S.X.
0.02 1e-2 42 Ptp.6708.1.S1_x_at CV257169 hypothetical protein - 2e-31 At1g42960 - C.G. S.X.
0.01 2e-1 38 PtpAffx.217312.1.S1_at pmrna32518 hypothetical protein - 8e-32 At1g05055 GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) C.G. S.X.
0.01 2e-1 38 PtpAffx.1912.6.S1_at BU894523 hypothetical protein - 5e-24 At4g29100 ethylene-responsive family protein C.G. S.X.
0.02 2e-1 38 PtpAffx.1912.8.S1_a_at CF231741 hypothetical protein - 9e-2 At4g29100 ethylene-responsive family protein C.G. S.X.
0.03 2e-1 38 PtpAffx.152741.1.S1_at CX169485 bromodomain protein - 4e-1 At2g03630 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 2e-37 157 Arabidopsis thaliana At2g48120 819424 PAC (PALE CRESS) The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC is probably involved in chloroplast mRNA maturation. Three alternative transcripts of this gene exist. - - - C.G. S.X.
0.20 2e-7 57 Glycine max GmaAffx.71748.1.S1_at CA783876 - - 6e-11 At2g48120 PAC (PALE CRESS) C.G. S.X.
0.11 3e-22 105 Hordeum vulgare Contig17574_at Contig17574 - - 2e-16 At2g48120 PAC (PALE CRESS) C.G. S.X.
0.11 1e-30 135 Oryza sativa Os05g0393400 AK100039.1 - PAC3 protein 2e-10 At2g48120 PAC (PALE CRESS) C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.26634.1.S1_at CA686921 - - 6e-1 At3g55646 unknown protein C.G. S.X.
0.05 1e-1 36 Vitis vinifera 1620038_at BQ796012 - - 2e+0 At4g09800 RPS18C (S18 RIBOSOMAL PROTEIN) C.G. S.X.
0.21 1e-30 133 Zea mays Zm.5097.1.A1_at BM379001 PAC - 9e-18 At2g48120 PAC (PALE CRESS) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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