Gene omics information

Query gene ID PtpAffx.21178.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7393.6PtpAffx.21178.1.S1_atBU887045hypothetical protein-1e+0At5g61210SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)S.X.H.G.
0.9199.2PtpAffx.209537.1.S1_atpmrna18896hypothetical protein-1e+0At3g59250F-box family proteinS.X.H.G.
0.9199.2PtpAffx.162331.1.S1_atCA821362--1e+0At4g11640ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE)S.X.H.G.
0.8096.0PtpAffx.200185.1.S1_atpmrna342hypothetical protein-8e-4At2g44450BGLU15 (BETA GLUCOSIDASE 15)S.X.H.G.
0.7393.6PtpAffx.127059.1.A1_atCV258719hypothetical protein-1e-4At1g66270BGLU21S.X.H.G.
0.4067.0PtpAffx.212416.1.S1_atpmrna24321hypothetical protein-5e-1At2g43350ATGPX3 (GLUTATHIONE PEROXIDASE 3)S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
76.1100.0GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue series
6.197.6GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.992.5GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue series
1.886.4GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.684.5GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.381.0GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
0.974.2GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
0.666.6GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
0.563.3GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
0.563.3GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue series
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+034PtpAffx.8201.1.A1_atDN488250--9e-2At5g38160protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.022e+034PtpAffx.29621.1.A1_atCV226870hypothetical protein-6e-4At3g16520UDP-glucoronosyl/UDP-glucosyl transferase family proteinC.G.S.X.
0.037e+032PtpAffx.87526.1.S1_atBU893569--2e-2At4g23130CRK5 (CYSTEINE-RICH RLK5)C.G.S.X.
0.037e+032PtpAffx.65435.1.S1_atCF228208--6e-1At5g20920EIF2 BETAC.G.S.X.
0.027e+032PtpAffx.25116.1.A1_atCV228813hypothetical protein-2e-8At3g54130josephin family proteinC.G.S.X.
0.017e+032PtpAffx.225069.1.S1_atpmrna44154hypothetical protein-6e-24At2g24610ATCNGC14C.G.S.X.
0.017e+032PtpAffx.224534.1.S1_atpmrna43154hypothetical protein-5e-27At4g30360ATCNGC17C.G.S.X.
0.017e+032PtpAffx.213672.1.S1_x_atpmrna26696hypothetical protein-4e-1At4g20270BAM3 (BARELY ANY MERISTEM 3)C.G.S.X.
0.017e+032PtpAffx.213672.1.S1_atpmrna26696hypothetical protein-4e-1At4g20270BAM3 (BARELY ANY MERISTEM 3)C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+034Arabidopsis thalianaAt5g61210836242SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)membrane localized t-SNARE SNAP25 homologue, probably involved in cytokinesis and cell plate formation---C.G.S.X.
0.037e+032Glycine maxGmaAffx.85304.1.S1_atBG155103--5e+0At5g38290peptidyl-tRNA hydrolase family proteinC.G.S.X.
0.041e+130Hordeum vulgareHM04L20u_atHM04L20u--9e-1At3g49300proline-rich family proteinC.G.S.X.
0.026e-136Oryza sativaOs01g0580400AY332467.1-Histone-fold domain containing protein3e+0At5g63135unknown proteinC.G.S.X.
0.045e+032Triticum aestivumTaAffx.16015.1.S1_atBQ800931--2e+0At3g61410-C.G.S.X.
0.036e+030Vitis vinifera1620111_atCF568854--1e-9At1g05850POM1 (POM-POM1)C.G.S.X.
0.032e+032Zea maysZm.8753.1.A1_atBM075492--2e+1At5g37820NIP4C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage