Gene omics information

Query gene ID	PtpAffx.211669.1.S1_x_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.64	88.4	PtpAffx.211669.1.S1_x_at	pmrna22876	hypothetical protein	-	9e-6	At2g46940	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.52	79.4	Ptp.3337.1.S1_s_at	BU892645	hypothetical protein	-	3e-1	At5g56100	glycine-rich protein / oleosin	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.19246.1.S1_at	CV245825	hypothetical protein	-	2e-32	At2g35940	BLH1 (BEL1-LIKE HOMEODOMAIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.249.113.S1_at	CV280925	hypothetical protein	-	6e+0	At5g23140	NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7)	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	Ptp.2716.1.S1_at	AY833406.1	glutaredoxin C1	-	5e-7	At5g63030	glutaredoxin, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.202071.1.S1_at	pmrna4132	hypothetical protein	-	6e-30	At5g36210	serine-type peptidase	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.4687.1.S1_s_at	CV280620	hypothetical protein	-	1e-2	At5g15150	ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.34	58.3	PtpAffx.225668.1.S1_at	pmrna45181	hypothetical protein	-	1e-3	At1g23780	F-box family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.6684.3.A1_a_at	CV241957	hypothetical protein	-	2e-6	At4g14570	acylaminoacyl-peptidase-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.3081.1.S1_at	DN491909	hypothetical protein	-	1e+0	At3g56380	ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.7	98.3	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
7.2	98.1	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
6.1	97.6	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.9	97.4	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
5.7	97.3	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.4	97.0	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.3	96.9	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.6	94.5	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	1858	PtpAffx.211669.1.S1_at	pmrna22876	hypothetical protein	-	9e-6	At2g46940	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.66	0	803	PtpAffx.202331.1.S1_at	pmrna4667	hypothetical protein	-	2e-2	At4g01670	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-2	40	PtpAffx.152452.3.S1_a_at	CV261699	-	-	2e+0	At5g49120	senescence-associated protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-1	38	PtpAffx.205417.1.S1_at	pmrna10720	hypothetical protein	-	2e-29	At1g09910	lyase	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e-1	36	PtpAffx.38225.1.S1_at	CV228983	hypothetical protein	-	4e-12	At5g23890	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e-1	36	PtpAffx.225816.1.S1_x_at	pmrna45425	BED finger-nbs resistance protein	-	3e-1	At5g56470	FAD-dependent oxidoreductase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e-1	36	PtpAffx.224914.1.S1_at	pmrna43841	BED finger-nbs resistance protein	-	8e-1	Atmg01240	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e-1	36	PtpAffx.213097.1.S1_at	pmrna25629	hypothetical protein	-	8e-29	At5g52410	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e-1	36	PtpAffx.213097.1.S1_s_at	pmrna25629	hypothetical protein	-	8e-29	At5g52410	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	9e-6	52	Arabidopsis thaliana	At2g46940	819308	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	4e-21	103	Glycine max	GmaAffx.30792.1.A1_at	BU544815	-	-	7e-2	At3g62070	unknown protein	C.G.	S.X.	Please select
0.03	7e-2	38	Hordeum vulgare	Contig17409_at	Contig17409	-	-	7e-1	At1g49390	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.02	3e-1	38	Oryza sativa	Os01g0284900	AK106618.1	-	Conserved hypothetical protein	8e-1	At2g37000	TCP family transcription factor, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Triticum aestivum	TaAffx.107507.2.S1_at	CA694102	-	-	4e+0	At5g42750	BKI1 (BRI1 kinase inhibitor 1)	C.G.	S.X.	Please select
0.26	2e-31	135	Vitis vinifera	1615969_at	CK138221.1	hypothetical protein LOC100262404	-	9e-5	At3g62070	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zea mays	ZmAffx.589.1.A1_at	AI715017	-	-	8e-1	At5g53880	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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