CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.211490.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.211490.1.S1_at pmrna22518 hypothetical protein - 3e-32 At2g03710 SEP4 (SEPALLATA 4) S.X. H.G.
0.55 82.2 PtpAffx.208357.1.S1_at pmrna16615 hypothetical protein - 1e-19 At3g06210 binding S.X. H.G.
0.55 82.2 PtpAffx.217356.1.S1_at pmrna32578 hypothetical protein - 8e-1 At3g48330 PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1) S.X. H.G.
0.29 50.5 PtpAffx.215800.1.S1_at pmrna30196 hypothetical protein - 2e-12 At3g19090 RNA-binding protein, putative S.X. H.G.
0.29 50.5 PtpAffx.204758.1.S1_s_at pmrna9361 hypothetical protein - 2e-2 At1g23710 unknown protein S.X. H.G.
0.19 32.7 PtpAffx.213550.1.S1_at pmrna26481 amino acid transporter - 6e-14 At5g02180 amino acid transporter family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.1 99.9 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
25.1 99.9 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
24.2 99.8 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
7.1 98.1 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.4 95.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
0.7 69.4 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
0.5 63.3 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.2 49.7 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.2 49.7 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 5e-35 149 PtpAffx.207908.1.S1_at pmrna15697 hypothetical protein - 9e-36 At2g03710 SEP4 (SEPALLATA 4) C.G. S.X.
0.14 1e-23 111 PtpAffx.9092.1.S1_s_at AF185574.2 hypothetical protein - 2e-56 At3g02310 SEP2 (SEPALLATA 2) C.G. S.X.
0.14 1e-23 111 PtpAffx.9092.1.S1_at AF185574.2 hypothetical protein - 2e-56 At3g02310 SEP2 (SEPALLATA 2) C.G. S.X.
0.19 1e-23 111 PtpAffx.213045.1.S1_at pmrna25528 hypothetical protein - 5e-24 At2g45650 AGL6 (AGAMOUS-LIKE 6) C.G. S.X.
0.14 6e-16 85 PtpAffx.50213.1.S1_at AY235222.1 hypothetical protein - 2e-75 At1g24260 SEP3 (SEPALLATA3) C.G. S.X.
0.10 2e-12 73 Ptp.2554.1.A1_at AF377868.1 MIKC mads-box transcription factor PTM5 - 4e-8 At2g45660 AGL20 (AGAMOUS-LIKE 20) C.G. S.X.
0.10 2e-9 63 PtpAffx.29222.1.S1_at AY615966.1 - - 2e-28 At1g69120 AP1 (APETALA1) C.G. S.X.
0.11 9e-9 61 PtpAffx.56981.1.S1_at BU873015 MIKC mads-box transcription factor SOC1 - 5e-26 At4g11880 AGL14 (agamous-like 14) C.G. S.X.
0.06 9e-9 61 Ptp.2578.1.S1_at AY501392.1 MADS9, AGL24 mads-box transcription factor - 2e-28 At4g24540 AGL24 (AGAMOUS-LIKE 24) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 3e-32 139 Arabidopsis thaliana At2g03710 814898 SEP4 (SEPALLATA 4) This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity. - - - C.G. S.X.
0.22 4e-26 119 Glycine max GmaAffx.70788.1.S1_at AI959798 - - 8e-35 At2g03710 SEP4 (SEPALLATA 4) C.G. S.X.
0.12 2e-10 65 Hordeum vulgare Contig2200_s_at Contig2200 - - 2e-3 At2g45650 AGL6 (AGAMOUS-LIKE 6) C.G. S.X.
0.14 1e-11 71 Oryza sativa Os09g0507200 U78892.1 - MADS box protein 1e-20 At3g02310 SEP2 (SEPALLATA 2) C.G. S.X.
0.15 2e-3 44 Triticum aestivum Ta.14469.3.S1_a_at BJ276784 MADS-box transcription factor TaAGL16 - 3e-5 At3g61120 AGL13 (AGAMOUS-LIKE 13) C.G. S.X.
0.52 2e-104 377 Vitis vinifera 1612606_at AF373602.1 MADS-box protein 3 - 7e-31 At2g03710 SEP4 (SEPALLATA 4) C.G. S.X.
0.25 2e-7 56 Zea mays Zm.292.1.S1_at L46397.1 MADS box protein - 2e-7 At3g61120 AGL13 (AGAMOUS-LIKE 13) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage