Gene omics information

Query gene ID	PtpAffx.211421.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	84.9	PtpAffx.211421.1.S1_at	pmrna22379	hypothetical protein	-	1e+0	At2g18880	VEL2 ((VERNALIZATION5/VIN3-LIKE))	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.1182.1.A1_at	CK089796	-	-	3e+0	At2g43350	ATGPX3 (GLUTATHIONE PEROXIDASE 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.92870.1.S1_at	CX654416	hypothetical protein	-	5e-32	At4g28190	ULT1 (ULTRAPETALA1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	Ptp.7051.1.S1_at	BU883904	hypothetical protein	-	3e+0	At4g36260	STY2 (STYLISH 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.211051.1.S1_at	pmrna21711	hypothetical protein	-	8e-6	At2g39050	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.130982.1.S1_s_at	CN520215	hypothetical protein	-	8e-37	At5g54800	GPT1	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.8	98.7	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
8.0	98.4	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.8	98.4	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.3	98.2	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.2	98.1	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.0	98.0	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.1	96.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.6	96.2	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	2e-5	50	PtpAffx.211422.1.S1_at	pmrna22380	hypothetical protein	-	9e-1	At4g02075	PIT1 (pitchoun 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e+0	34	PtpAffx.37974.1.A1_at	CV231652	-	-	2e+0	At4g22810	DNA-binding protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e+0	34	PtpAffx.206546.1.S1_at	pmrna12987	hypothetical protein	-	1e-15	At2g23890	5' nucleotidase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e+0	32	PtpAffx.76054.1.A1_at	CV227926	hypothetical protein	-	7e-50	At1g16080	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	5e+0	32	PtpAffx.218704.1.S1_at	pmrna34422	glutathione peroxidase	-	1e-2	At2g31570	ATGPX2 (GLUTATHIONE PEROXIDASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e+0	32	PtpAffx.212302.1.S1_x_at	pmrna24124	hypothetical protein	-	5e-22	At3g56370	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e+0	32	PtpAffx.208077.1.S1_at	pmrna16044	hypothetical protein	-	3e-18	At1g14850	NUP155	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	5e+0	32	PtpAffx.207285.1.S1_at	pmrna14454	hypothetical protein	-	9e-1	At1g55140	RNA binding / ribonuclease III	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e+0	32	PtpAffx.203331.1.S1_at	pmrna6625	hypothetical protein	-	2e-6	At1g56140	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At2g18880	816404	VEL2 ((VERNALIZATION5/VIN3-LIKE))	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e+0	32	Glycine max	GmaAffx.12107.1.S1_at	AW704607	-	-	6e-14	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	C.G.	S.X.	Please select
0.03	8e+0	30	Hordeum vulgare	HY10B09u_s_at	HY10B09u	-	-	3e+0	At4g00893	-	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	OsAffx.14153.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Triticum aestivum	TaAffx.30551.1.S1_at	CA624144	-	-	3e-1	At1g10530	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1620777_at	CF202020.1	-	-	1e-34	At1g05720	selenoprotein family protein	C.G.	S.X.	Please select
0.04	1e-1	36	Zea mays	Zm.8721.1.A1_at	BM339688	catalytic/ oxidoreductase, acting on NADH or NADPH	-	3e-1	At1g10530	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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