Gene omics information

Query gene ID	PtpAffx.21139.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	96.0	PtpAffx.21139.1.S1_at	BU889382	hypothetical protein	-	2e-15	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.57928.2.S1_at	BI120751	hypothetical protein	-	1e+0	At3g52990	pyruvate kinase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.111871.2.S1_at	CX170955	hypothetical protein	-	5e+0	Atmg01250	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.82253.1.A1_at	CV232973	hypothetical protein	-	2e-20	At3g52990	pyruvate kinase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	Ptp.1501.1.A1_s_at	CK093594	hypothetical protein	-	4e-23	At2g18190	AAA-type ATPase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.114748.1.A1_at	CV245313	hypothetical protein	-	3e-14	At5g42720	glycosyl hydrolase family 17 protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
36.4	100.0	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
12.0	99.2	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.3	96.9	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.8	96.4	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.8	96.4	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.5	83.5	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.4	82.3	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	2e-89	329	Ptp.4187.1.S1_at	CA930797	hypothetical protein	-	2e-9	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	C.G.	S.X.	Please selecteFP Browser (expression)
0.43	6e-87	321	PtpAffx.59631.1.S1_s_at	BI784472	hypothetical protein	-	7e-6	At1g59860	17.6 kDa class I heat shock protein (HSP17.6A-CI)	C.G.	S.X.	Please selecteFP Browser (expression)
0.43	6e-87	321	PtpAffx.14337.3.S1_at	BU890078	-	-	6e-3	At2g29500	17.6 kDa class I small heat shock protein (HSP17.6B-CI)	C.G.	S.X.	Please selecteFP Browser (expression)
0.40	1e-78	293	PtpAffx.78723.1.S1_at	DN496556	-	-	3e-2	At2g29500	17.6 kDa class I small heat shock protein (HSP17.6B-CI)	C.G.	S.X.	Please selecteFP Browser (expression)
0.46	1e-78	293	PtpAffx.27422.2.A1_at	CA934579	hypothetical protein	-	4e-4	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	C.G.	S.X.	Please selecteFP Browser (expression)
0.44	1e-78	293	PtpAffx.14337.1.S1_at	CV227692	-	-	1e-3	At5g59720	HSP18.2 (heat shock protein 18.2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.42	5e-78	291	Ptp.4166.1.S1_at	BU893124	-	-	9e-2	At5g59720	HSP18.2 (heat shock protein 18.2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.40	3e-73	276	PtpAffx.27422.1.S1_at	BU892225	hypothetical protein	-	4e-4	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	C.G.	S.X.	Please selecteFP Browser (expression)
0.40	3e-73	276	PtpAffx.27422.1.S1_x_at	BU892225	hypothetical protein	-	4e-4	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	2e-15	83	Arabidopsis thaliana	At1g07400	837252	17.8 kDa class I heat shock protein (HSP17.8-CI)	F:unknown;P:response to oxidative stress, response to heat;C:unknown;BPOFAM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.39	2e-46	186	Glycine max	GmaAffx.90913.1.S1_s_at	CF806638	-	-	1e-9	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	C.G.	S.X.	Please select
0.27	3e-15	81	Hordeum vulgare	HY03K23u_at	HY03K23u	-	-	1e-12	At3g46230	ATHSP17.4	C.G.	S.X.	Please select
0.25	5e-11	69	Oryza sativa	Os01g0136200	AK121025.1	-	17.7 kDa heat shock protein	1e-4	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.22	3e-17	89	Triticum aestivum	Ta.27661.1.S1_at	AJ614980	heat shock protein 16.9	-	5e-19	At3g46230	ATHSP17.4	C.G.	S.X.	Please select
0.32	6e-28	123	Vitis vinifera	1621652_at	CF518056	hypothetical protein LOC100262206	-	6e-9	At5g59720	HSP18.2 (heat shock protein 18.2)	C.G.	S.X.	Please select
0.29	4e-8	57	Zea mays	Zm.2361.1.A1_at	BM381388	hypothetical protein LOC100191552	-	3e-17	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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