CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.211313.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 78.6 PtpAffx.211313.1.S1_at pmrna22182 hypothetical protein - 7e-4 At1g52855 unknown protein S.X. H.G.
0.67 91.1 PtpAffx.69725.1.S1_a_at DN494612 hypothetical protein - 1e+0 At2g41130 basic helix-loop-helix (bHLH) family protein S.X. H.G.
0.57 84.2 PtpAffx.30128.1.S1_at CV244941 hypothetical protein - 3e+0 At2g23910 cinnamoyl-CoA reductase-related S.X. H.G.
0.55 82.2 PtpAffx.2103.1.A1_s_at CV246207 hypothetical protein - 3e-8 At4g35320 unknown protein S.X. H.G.
0.47 74.6 PtpAffx.265.1.A1_at CV261776 hypothetical protein - 3e-89 At2g47060 serine/threonine protein kinase, putative S.X. H.G.
0.44 71.9 PtpAffx.206254.1.S1_at pmrna12413 hypothetical protein - 1e-1 At2g07280 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.8 99.9 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
20.8 99.8 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.6 98.3 GSM372099 Clone3200_LPI5_N+_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.3 98.2 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0 95.3 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3 93.7 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1 93.2 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1 93.2 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8 86.4 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 658 PtpAffx.211313.1.S1_x_at pmrna22182 hypothetical protein - 7e-4 At1g52855 unknown protein C.G. S.X.
0.13 5e-21 101 PtpAffx.91785.1.S1_at DN490975 hypothetical protein - 2e+0 At4g32717 SCRL24 (SCR-Like 24) C.G. S.X.
0.02 6e-2 38 PtpAffx.203789.1.S1_at pmrna7477 oligopeptide transporter OPT family - 7e-39 At3g17650 YSL5 (YELLOW STRIPE LIKE 5) C.G. S.X.
0.02 3e-1 36 PtpAffx.5845.1.S1_at CX172361 hypothetical protein - 5e-82 At1g09780 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative C.G. S.X.
0.02 3e-1 36 PtpAffx.249.26.A1_s_at BP933372 hypothetical protein - 1e-8 At1g71695 peroxidase 12 (PER12) (P12) (PRXR6) C.G. S.X.
0.02 3e-1 36 Ptp.2344.1.A1_at CV243674 hypothetical protein - 2e-4 At1g71695 peroxidase 12 (PER12) (P12) (PRXR6) C.G. S.X.
0.02 3e-1 36 Ptp.2344.1.A1_x_at CV243674 hypothetical protein - 2e-4 At1g71695 peroxidase 12 (PER12) (P12) (PRXR6) C.G. S.X.
0.03 1e+0 34 PtpAffx.94880.1.A1_at CV267822 - - 4e-1 At5g46790 unknown protein C.G. S.X.
0.02 1e+0 34 PtpAffx.5244.1.S1_a_at CV256118 hypothetical protein - 4e-98 At4g21800 QQT2 (quatre-quart2) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 7e-4 44 Arabidopsis thaliana At1g52855 2745824 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.20 2e-5 50 Glycine max GmaAffx.52722.1.S1_at BU544238 - - 5e+0 At5g54225 LCR83 (Low-molecular-weight cysteine-rich 83) C.G. S.X.
0.04 3e-1 34 Hordeum vulgare Contig19196_at Contig19196 - - 1e+0 At3g01230 unknown protein C.G. S.X.
0.05 1e+0 34 Oryza sativa OsAffx.5972.1.S1_at - - - 0 C.G. S.X.
0.04 5e-2 38 Triticum aestivum TaAffx.38298.1.A1_at BJ240360 - - 4e+0 At5g14110 unknown protein C.G. S.X.
0.04 2e-1 34 Vitis vinifera 1612763_at CF373209 hypothetical protein LOC100253894 - 3e-4 At1g62770 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.04 3e-1 34 Zea mays Zm.9357.1.A1_at BM268323 - - 1e+0 At4g36060 basic helix-loop-helix (bHLH) family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage