CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.211286.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 83.9 PtpAffx.211286.1.S1_at pmrna22136 hypothetical protein - 6e-1 At4g19820 glycosyl hydrolase family 18 protein S.X. H.G.
0.22 38.3 PtpAffx.219663.1.S1_at pmrna35630 hypothetical protein - 1e+1 At3g43505 LCR30 (Low-molecular-weight cysteine-rich 30) S.X. H.G.
0.22 38.3 PtpAffx.204560.1.S1_at pmrna8955 - - 3e-7 At4g38840 auxin-responsive protein, putative S.X. H.G.
0.14 23.5 PtpAffx.220193.1.S1_x_at pmrna36549 hypothetical protein - 3e+0 At5g58630 unknown protein S.X. H.G.
0.11 18.1 PtpAffx.223885.1.S1_at pmrna42107 hypothetical protein - 7e-1 At2g04675 unknown protein S.X. H.G.
0.07 11.6 Ptp.8093.2.A1_at CV260421 hypothetical protein - 3e+0 At5g39630 vesicle transport v-SNARE family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.1 99.9 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
10.4 99.0 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
7.2 98.1 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.0 97.5 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.6 97.2 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1 93.2 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9 92.5 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e-6 52 PtpAffx.215959.1.S1_at pmrna30444 hypothetical protein - 2e+0 At2g21140 ATPRP2 (PROLINE-RICH PROTEIN 2) C.G. S.X.
0.03 2e-1 36 PtpAffx.44182.1.A1_at CV242004 pseudo response regulator - 2e-5 At5g24470 APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5) C.G. S.X.
0.04 2e-1 36 PtpAffx.222274.1.S1_s_at pmrna39579 hypothetical protein - 3e-1 At5g02450 60S ribosomal protein L36 (RPL36C) C.G. S.X.
0.03 8e-1 34 PtpAffx.218448.1.S1_at pmrna34068 hypothetical protein - 1e-1 At1g18170 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein C.G. S.X.
0.03 8e-1 34 PtpAffx.210458.1.S1_at pmrna20535 hypothetical protein - 4e-4 At5g07940 - C.G. S.X.
0.05 8e-1 34 PtpAffx.128212.1.A1_at CV227047 hypothetical protein - 5e-2 At5g48680 sterile alpha motif (SAM) domain-containing protein C.G. S.X.
0.03 3e+0 32 PtpAffx.221358.1.S1_at pmrna38210 - - 1e-1 At2g20680 glycosyl hydrolase family 5 protein / cellulase family protein C.G. S.X.
0.01 3e+0 32 PtpAffx.208171.1.S1_at pmrna16254 hypothetical protein - 6e-16 At1g04210 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.03 3e+0 32 PtpAffx.206541.1.S1_at pmrna12978 AP2 domain-containing transcription factor - 1e-7 At1g16060 ovule development protein, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e-1 34 Arabidopsis thaliana At4g19820 827726 glycosyl hydrolase family 18 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;MBFOVPA - - - C.G. S.X.
0.04 3e+0 32 Glycine max PsAffx.C82000039_at PsAffx.C82000039 - - 4e+0 At5g12880 proline-rich family protein C.G. S.X.
0.04 5e+0 30 Hordeum vulgare HVSMEg0015L13f2_x_at HVSMEg0015L13f2 - - 3e+0 At2g39120 ubiquitin thiolesterase C.G. S.X.
0.05 1e+0 34 Oryza sativa OsAffx.21187.1.S1_at - - - 0 C.G. S.X.
0.04 6e-1 34 Triticum aestivum TaAffx.23865.1.S1_at CA729267 - - 1e+0 At5g42380 CML37 (CALMODULIN LIKE 37) C.G. S.X.
0.04 7e-1 32 Vitis vinifera 1619740_at CF214472 hypothetical protein LOC100260241 - 2e-1 At2g27535 ribosomal protein L10A family protein C.G. S.X.
0.04 1e+0 32 Zea mays Zm.4030.2.A1_at AY103695.1 hypothetical protein LOC100272307 - 8e-21 At3g60245 60S ribosomal protein L37a (RPL37aC) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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