Gene omics information

Query gene ID	PtpAffx.211210.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	84.2	PtpAffx.211210.1.S1_at	pmrna22025	hypothetical protein	-	3e+0	At3g55820	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.67699.1.A1_at	DN487557	-	-	7e+0	At4g31330	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.215214.1.S1_at	pmrna29271	-	-	3e-2	At4g31080	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.216810.1.S1_at	pmrna31842	hypothetical protein	-	2e-15	At2g35720	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.209085.1.S1_at	pmrna17973	-	-	1e-1	At1g47980	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.221842.1.S1_at	pmrna38925	hypothetical protein	-	1e+0	At1g71310	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.10	16.3	Ptp.3007.2.S1_at	DN500603	hypothetical protein	-	7e-36	At1g43620	UDP-glucose:sterol glucosyltransferase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.201468.1.S1_at	pmrna2885	histidine phosphotransfer protein	-	8e-1	At5g20810	auxin-responsive protein, putative / small auxin up RNA (SAUR_B)	S.X.	H.G.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.209395.1.S1_at	pmrna18610	hypothetical protein	-	2e+0	At2g28900	ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.9	99.7	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
16.0	99.6	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
13.9	99.4	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.6	94.5	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8	92.1	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.73	4e-71	268	PtpAffx.211209.1.S1_x_at	pmrna22024	hypothetical protein	-	3e+0	At5g01650	macrophage migration inhibitory factor family protein / MIF family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.73	4e-71	268	PtpAffx.211209.1.S1_at	pmrna22024	hypothetical protein	-	3e+0	At5g01650	macrophage migration inhibitory factor family protein / MIF family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.48	2e-48	192	PtpAffx.211208.1.S1_at	pmrna22022	hypothetical protein	-	5e-1	At5g02510	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.32	5e-27	121	PtpAffx.211211.1.S1_x_at	pmrna22026	hypothetical protein	-	1e+0	At1g18380	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.32	5e-27	121	PtpAffx.211211.1.S1_at	pmrna22026	hypothetical protein	-	1e+0	At1g18380	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	3e-22	105	PtpAffx.224957.1.S1_at	pmrna43899	hypothetical protein	-	4e+0	At5g56900	CwfJ-like family protein / zinc finger (CCCH-type) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	3e-22	105	PtpAffx.224957.1.S1_s_at	pmrna43899	hypothetical protein	-	4e+0	At5g56900	CwfJ-like family protein / zinc finger (CCCH-type) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.32	7e-11	67	PtpAffx.211212.1.S1_x_at	pmrna22027	hypothetical protein	-	5e+0	At1g18380	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.32	7e-11	67	PtpAffx.211212.1.S1_s_at	pmrna22027	hypothetical protein	-	5e+0	At1g18380	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At3g55820	824748	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	4e+0	32	Glycine max	GmaAffx.92679.1.S1_s_at	CF808404	-	-	4e-1	At2g18110	elongation factor 1-beta, putative / EF-1-beta, putative	C.G.	S.X.	Please select
0.04	5e+0	30	Hordeum vulgare	HV12J05u_at	HV12J05u	-	-	1e+0	At3g52360	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Oryza sativa	Os01g0184700	AK061353.1	-	Conserved hypothetical protein	1e-2	At2g01340	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+1	30	Triticum aestivum	TaAffx.79207.1.S1_at	CA719803	-	-	1e-2	At1g09560	GLP5 (GERMIN-LIKE PROTEIN 5)	C.G.	S.X.	Please select
0.04	3e+0	30	Vitis vinifera	1617036_at	CF210807	hypothetical protein LOC100243315	-	2e-5	At3g21070	NADK1 (NAD KINASE 1)	C.G.	S.X.	Please select
0.04	2e+1	28	Zea mays	ZmAffx.537.1.A1_at	AI711809	-	-	3e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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