CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.211136.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 80.5 PtpAffx.211136.1.S1_s_at pmrna21877 hypothetical protein - 2e-27 At3g03560 unknown protein S.X. H.G.
0.55 82.2 PtpAffx.7338.1.S1_at CK090387 hypothetical protein - 2e+0 At2g46190 - S.X. H.G.
0.50 78.6 PtpAffx.205328.1.S1_at pmrna10553 hypothetical protein - 1e-6 At3g50430 unknown protein S.X. H.G.
0.50 78.6 PtpAffx.18732.1.A1_at CV275921 hypothetical protein - 1e+0 At4g32320 APX6 S.X. H.G.
0.50 78.6 PtpAffx.224804.1.S1_s_at pmrna43664 hypothetical protein - 3e-11 At1g67520 lectin protein kinase family protein S.X. H.G.
0.12 19.6 PtpAffx.207201.1.S1_at pmrna14295 hypothetical protein - 3e-5 At3g19780 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.2 98.1 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4 94.0 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.1 93.2 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0 92.9 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6 91.3 GSM244436 Mmd infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5 90.9 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5 90.9 GSM244434 Mlp infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5 90.9 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3 89.8 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0 88.0 GSM372044 Clone1979_LPI5_N+_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1451 PtpAffx.211136.1.S1_at pmrna21877 hypothetical protein - 2e-27 At3g03560 unknown protein C.G. S.X.
0.06 9e-9 61 PtpAffx.65895.1.S1_at DN502872 hypothetical protein - 7e-1 At1g25250 AtIDD16 (Arabidopsis thaliana Indeterminate(ID)-Domain 16) C.G. S.X.
0.02 1e-1 38 PtpAffx.213965.1.S1_x_at pmrna27214 hypothetical protein - 1e-24 At1g13960 WRKY4 C.G. S.X.
0.02 1e-1 38 PtpAffx.213965.1.S1_s_at pmrna27214 hypothetical protein - 1e-24 At1g13960 WRKY4 C.G. S.X.
0.02 1e-1 38 PtpAffx.213965.1.S1_at pmrna27214 hypothetical protein - 1e-24 At1g13960 WRKY4 C.G. S.X.
0.02 2e+0 34 PtpAffx.62570.1.A1_at CV274525 - - 1e+0 At3g06778 heat shock protein binding / unfolded protein binding C.G. S.X.
0.01 2e+0 34 PtpAffx.223043.1.S1_at pmrna40832 - - 2e-4 At1g32970 subtilase family protein C.G. S.X.
0.01 2e+0 34 PtpAffx.211358.1.S1_at pmrna22263 hypothetical protein - 2e-21 At1g06900 catalytic/ metal ion binding / metalloendopeptidase/ zinc ion binding C.G. S.X.
0.02 2e+0 34 PtpAffx.210003.1.S1_at pmrna19730 hypothetical protein - 2e+0 At5g47635 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 2e-27 123 Arabidopsis thaliana At3g03560 821235 unknown protein F:unknown;P:unknown;C:plasma membrane;POBMA - - - C.G. S.X.
0.34 1e-20 101 Glycine max GmaAffx.59173.1.S1_at BM885272 - - 5e+0 At4g21050 Dof-type zinc finger domain-containing protein C.G. S.X.
0.03 1e+1 30 Hordeum vulgare HVSMEn0007B03f2_x_at HVSMEn0007B03f2 - - 3e+0 At1g65820 microsomal glutathione s-transferase, putative C.G. S.X.
0.02 3e+0 34 Oryza sativa Os09g0304800 CB681576 - Conserved hypothetical protein 2e+0 At4g35320 unknown protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.80029.1.S1_at CA703988 - - 4e+0 At5g53486 unknown protein C.G. S.X.
0.32 6e-28 123 Vitis vinifera 1621814_at CD720972 - - 2e-28 At3g03560 unknown protein C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.1322.1.S1_at 40794996-146 - - 2e-1 At3g30520 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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