CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.210962.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.210962.1.S1_s_at pmrna21538 hypothetical protein - 3e-2 At5g56600 PRF3 (PROFILIN 3) S.X. H.G.
0.44 71.9 PtpAffx.216299.1.S1_at pmrna30984 amino acid permease - 9e-1 At5g23810 AAP7 S.X. H.G.
0.17 29.1 Ptp.4672.1.S1_at BI129888 hypothetical protein - 3e-26 At4g24530 unknown protein S.X. H.G.
0.08 12.9 PtpAffx.207662.1.S1_at pmrna15207 hypothetical protein - 6e-4 At3g45740 hydrolase family protein / HAD-superfamily protein S.X. H.G.
0.06 9.8 Ptp.5082.1.S1_s_at CX654214 hypothetical protein - 8e-41 At3g52880 monodehydroascorbate reductase, putative S.X. H.G.
0.03 5.2 PtpAffx.151332.1.S1_at DN500752 - - 4e+0 At2g16070 PDV2 (PLASTID DIVISION2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.1 98.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
6.3 97.7 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.0 97.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.8 97.4 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.3 96.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.4 95.9 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.3 95.8 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9 92.5 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 3e-86 317 PtpAffx.220851.1.S1_at pmrna37301 hypothetical protein - 7e-9 At3g59990 MAP2B (METHIONINE AMINOPEPTIDASE 2B) C.G. S.X.
0.35 2e-81 301 PtpAffx.223154.1.S1_at pmrna41014 hypothetical protein - 5e-3 At1g29160 Dof-type zinc finger domain-containing protein C.G. S.X.
0.44 2e-72 272 PtpAffx.210327.1.S1_x_at pmrna20318 hypothetical protein - 1e+1 At5g07330 unknown protein C.G. S.X.
0.38 2e-56 218 PtpAffx.221719.1.S1_at pmrna38748 hypothetical protein - 9e-1 At5g35100 peptidyl-prolyl cis-trans isomerase C.G. S.X.
0.35 2e-31 135 PtpAffx.212130.1.S1_x_at pmrna23790 hypothetical protein - 6e-1 At3g13677 unknown protein C.G. S.X.
0.35 2e-31 135 PtpAffx.212130.1.S1_at pmrna23790 hypothetical protein - 6e-1 At3g13677 unknown protein C.G. S.X.
0.21 1e-20 99 PtpAffx.202153.1.S1_s_at pmrna4305 hypothetical protein - 2e-1 At2g39445 - C.G. S.X.
0.41 3e-12 71 PtpAffx.212128.1.S1_x_at pmrna23787 hypothetical protein - 1e-1 At2g39445 - C.G. S.X.
0.07 3e-9 61 PtpAffx.212326.1.S1_at pmrna24170 hypothetical protein - 4e-1 At2g21530 forkhead-associated domain-containing protein / FHA domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e-2 38 Arabidopsis thaliana At5g56600 835761 PRF3 (PROFILIN 3) Encodes profilin3, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Originally known as profilin5, and later named profilin3. Expressed in vegetative organs. - - - C.G. S.X.
0.07 3e-3 42 Glycine max Gma.10850.1.S1_at BI788127 - - 4e-1 At3g16870 zinc finger (GATA type) family protein C.G. S.X.
0.11 1e-2 38 Hordeum vulgare Contig26118_s_at Contig26118 - - 1e+0 At5g36280 - C.G. S.X.
0.07 4e-3 42 Oryza sativa OsAffx.2531.1.S1_at - - - 0 C.G. S.X.
0.09 2e-3 42 Triticum aestivum TaAffx.50923.1.S1_at CA733414 - - 3e-1 At5g03030 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.09 9e-3 38 Vitis vinifera 1614311_at CF516097 hypothetical protein LOC100264243 - 2e-6 At1g15780 unknown protein C.G. S.X.
0.08 1e-2 38 Zea mays Zm.17848.1.A1_s_at CK786759 hypothetical protein LOC100279789 - 2e+1 At5g27980 seed maturation family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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