Gene omics information

Query gene ID	PtpAffx.210950.1.S1_at
Gene name	cationic amino acid transporter
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	75.4	PtpAffx.210950.1.S1_at	pmrna21514	cationic amino acid transporter	-	7e-14	At4g21120	AAT1 (AMINO ACID TRANSPORTER 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.7372.2.S1_a_at	CV269484	hypothetical protein	-	6e+0	At5g53420	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.210452.1.S1_at	pmrna20524	-	-	1e-37	At1g49010	myb family transcription factor	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.204875.1.S1_s_at	pmrna9632	hypothetical protein	-	2e-22	At5g19855	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.212285.1.S1_at	pmrna24084	hypothetical protein	-	3e-3	At4g12910	scpl20 (serine carboxypeptidase-like 20)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.208409.1.S1_s_at	pmrna16713	hypothetical protein	-	9e-4	At1g69870	proton-dependent oligopeptide transport (POT) family protein	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.1	99.5	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
14.9	99.5	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
8.2	98.5	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.7	98.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.3	96.9	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.1	96.8	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.7	96.3	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1	93.2	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0	92.9	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9	92.5	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	4e-47	190	PtpAffx.67898.1.A1_at	BP932580	cationic amino acid transporter	-	3e-1	At4g21120	AAT1 (AMINO ACID TRANSPORTER 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	2e-11	71	PtpAffx.200298.1.S1_at	pmrna590	-	-	6e-8	At2g34960	CAT5 (CATIONIC AMINO ACID TRANSPORTER 5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.200139.1.S1_at	pmrna258	hypothetical protein	-	2e-30	At1g31740	BGAL15 (beta-galactosidase 15)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.222045.1.S1_at	pmrna39247	hypothetical protein	-	2e+0	At4g21310	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.217375.1.S1_at	pmrna32606	hypothetical protein	-	6e-1	At2g33740	CUTA	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.202134.1.S1_at	pmrna4263	hypothetical protein	-	1e-101	At3g20050	ATTCP-1	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.117551.1.S1_s_at	CX178300	hypothetical protein	-	4e-29	At5g50000	protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	Ptp.226.1.S1_at	CV241733	hypothetical protein	-	7e-78	At3g20050	ATTCP-1	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e+0	34	PtpAffx.30884.2.A1_at	CV257817	-	-	5e+0	At1g72170	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	7e-14	79	Arabidopsis thaliana	At4g21120	827860	AAT1 (AMINO ACID TRANSPORTER 1)	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	GmaAffx.12874.1.A1_at	BE807727	-	-	4e+0	At5g65210	TGA1	C.G.	S.X.	Please select
0.02	2e+0	34	Hordeum vulgare	HB08F22r_x_at	HB08F22r	-	-	3e+0	At3g07570	membrane protein, putative	C.G.	S.X.	Please select
0.04	7e-3	44	Oryza sativa	OsAffx.25529.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	9e-1	36	Triticum aestivum	TaAffx.78636.1.S1_at	CA729780	-	-	4e+0	At5g38180	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.14	3e-16	85	Vitis vinifera	1612194_at	CD799692	hypothetical protein LOC100263534	-	7e-2	At5g14420	RGLG2 (RING domain Ligase2)	C.G.	S.X.	Please select
0.02	6e+0	32	Zea mays	ZmAffx.1083.1.A1_at	AI974922	-	-	1e+0	At1g59830	PP2A-1	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage