Gene omics information

Query gene ID	PtpAffx.210864.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.210864.1.S1_at	pmrna21339	hypothetical protein	-	1e-64	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.2877.3.S1_s_at	CK096556	hypothetical protein	-	2e-9	At3g15880	protein binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.209374.1.S1_s_at	pmrna18566	hypothetical protein	-	1e-65	At2g39260	RNA binding / binding / protein binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.200586.1.S1_s_at	pmrna1161	hypothetical protein	-	5e-46	At5g64550	loricrin-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.5963.1.S1_s_at	CV243600	hypothetical protein	-	7e-112	At2g23980	ATCNGC6	S.X.	H.G.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.131450.1.S1_at	CK103111	hypothetical protein	-	1e-32	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.0	96.6	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	4205	PtpAffx.210864.1.S1_x_at	pmrna21339	hypothetical protein	-	1e-64	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	C.G.	S.X.	Please selecteFP Browser (expression)
1.00	0	4205	PtpAffx.210864.1.S1_s_at	pmrna21339	hypothetical protein	-	1e-64	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.60	0	1477	Ptp.6439.1.S1_s_at	BU874074	hypothetical protein	-	4e-54	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.60	0	1477	Ptp.6439.1.S1_at	BU874074	hypothetical protein	-	4e-54	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.51	0	1130	Ptp.3269.1.S1_s_at	CN523535	hypothetical protein	-	1e-26	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.34	5e-127	456	PtpAffx.26930.1.S1_at	CV225552	hypothetical protein	-	1e-4	At4g02150	MOS6 (MODIFIER OF SNC1, 6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.41	2e-117	424	PtpAffx.4546.1.S1_at	CV260331	hypothetical protein	-	8e-113	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.26	4e-41	171	PtpAffx.4546.2.S1_a_at	CV244444	hypothetical protein	-	2e-13	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.32	1e-31	139	PtpAffx.52325.1.S1_s_at	CX659919	hypothetical protein	-	3e-28	At4g02150	MOS6 (MODIFIER OF SNC1, 6)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.46	1e-64	248	Arabidopsis thaliana	At4g16143	827302	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.54	0	741	Glycine max	Gma.7528.2.S1_at	BM891312	-	-	3e-49	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	C.G.	S.X.	Please select
0.42	2e-83	309	Hordeum vulgare	Contig4129_at	Contig4129	-	-	9e-26	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	C.G.	S.X.	Please select
0.42	5e-66	254	Oryza sativa	Os01g0253300	AB004660.1	-	Importin alpha 2	6e-24	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.40	1e-80	301	Triticum aestivum	Ta.28018.1.S1_at	CK159354	-	-	2e-27	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	C.G.	S.X.	Please select
0.26	6e-49	194	Vitis vinifera	1607723_at	CF568821	-	-	5e-18	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	C.G.	S.X.	Please select
0.31	8e-49	194	Zea mays	Zm.4271.2.S1_a_at	AY103821.1	hypothetical protein LOC100193437	-	2e-20	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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