Gene omics information

Query gene ID	PtpAffx.210857.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	96.0	PtpAffx.210857.1.S1_at	pmrna21321	hypothetical protein	-	1e-38	At1g56350	peptide chain release factor, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.207776.1.S1_s_at	pmrna15461	hypothetical protein	-	1e-5	At5g05520	outer membrane OMP85 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.151883.1.A1_s_at	CK089317	-	-	4e-4	At4g35785	nucleic acid binding / nucleotide binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.215955.1.S1_at	pmrna30438	hypothetical protein	-	3e-15	At1g09020	SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.211469.1.S1_at	pmrna22477	hypothetical protein	-	3e-1	At2g02390	ATGSTZ1 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE ZETA 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.213050.1.S1_at	pmrna25538	hypothetical protein	-	7e-22	At5g52040	ATRSP41	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.157613.1.S1_at	CX656242	hypothetical protein	-	2e-8	At4g31010	RNA binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.14	23.5	Ptp.880.2.A1_a_at	CV253146	hypothetical protein	-	1e-21	At4g36690	ATU2AF65A	S.X.	H.G.	Please selecteFP Browser (expression)
0.06	9.8	PtpAffx.1577.1.S1_at	BU824466	-	-	2e-4	At4g27750	ISI1 (IMPAIRED SUCROSE INDUCTION 1)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.8	94.9	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.4	94.0	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8	92.1	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.8	92.1	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	8e-1	36	PtpAffx.5506.1.S1_at	BU872766	hypothetical protein	-	4e-5	At3g50690	leucine-rich repeat family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e-1	36	PtpAffx.214147.1.S1_at	pmrna27524	hypothetical protein	-	2e-28	At4g32750	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e-1	36	PtpAffx.213948.1.S1_at	pmrna27191	hypothetical protein	-	1e-30	At5g15270	KH domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e-1	36	PtpAffx.204143.1.S1_s_at	pmrna8166	hypothetical protein	-	2e-17	At5g15270	KH domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-1	36	PtpAffx.201676.1.S1_at	pmrna3338	hypothetical protein	-	3e-94	At3g58160	XIJ	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e-1	36	PtpAffx.1985.2.S1_at	CV271196	hypothetical protein	-	2e-23	At2g41150	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-1	36	PtpAffx.19059.1.A1_at	CV276613	hypothetical protein	-	3e-5	At1g56500	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-1	36	PtpAffx.1985.1.A1_a_at	CV228972	-	-	7e-6	At2g41150	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e-1	36	PtpAffx.1985.2.S1_a_at	CV271196	-	-	2e-23	At2g41150	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	1e-38	161	Arabidopsis thaliana	At1g56350	842089	peptide chain release factor, putative	F:translation release factor activity, codon specific, translation release factor activity;P:translational termination;C:cytoplasm;OBMFPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.37	1e-49	198	Glycine max	GmaAffx.35002.1.S1_at	AW759742	-	-	6e-3	At1g56350	peptide chain release factor, putative	C.G.	S.X.	Please select
0.27	6e-24	111	Hordeum vulgare	Contig17141_at	Contig17141	-	-	1e-26	At1g56350	peptide chain release factor, putative	C.G.	S.X.	Please select
0.26	7e-36	153	Oryza sativa	Os03g0305700	AK073807.1	-	Peptide chain release factor 2	5e-24	At1g56350	peptide chain release factor, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	4e-11	69	Triticum aestivum	TaAffx.111026.1.S1_at	CA649591	-	-	5e-2	At1g56350	peptide chain release factor, putative	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1611423_s_at	CB916855	hypothetical protein LOC100254781	-	4e+0	At4g01430	nodulin MtN21 family protein	C.G.	S.X.	Please select
0.17	8e-17	87	Zea mays	Zm.4714.1.A1_at	AI738144	peptide chain release factor 2	-	3e-14	At1g56350	peptide chain release factor, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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