Gene omics information

Query gene ID	PtpAffx.210792.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.68	91.3	PtpAffx.210792.1.S1_at	pmrna21173	hypothetical protein	-	5e-2	At5g63740	zinc finger protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.10648.2.S1_a_at	BI126015	hypothetical protein	-	3e-90	At5g27840	TOPP8	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.44.1.S1_a_at	CV244697	hypothetical protein	-	5e-1	At1g21810	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.6693.1.S1_s_at	DN502598	copper transporter	-	9e-2	At5g59030	COPT1 (copper transporter 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.218447.1.S1_at	pmrna34066	hypothetical protein	-	1e-11	At1g16670	protein kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	Ptp.8026.1.A1_at	BU815525	hypothetical protein	-	4e+0	At4g10450	60S ribosomal protein L9 (RPL90D)	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.152326.1.S1_s_at	CK094925	hypothetical protein	-	5e-10	At2g47060	serine/threonine protein kinase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.131744.1.S1_at	CK087907	hypothetical protein	-	3e-55	At2g06530	VPS2.1	S.X.	H.G.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.221019.1.S1_at	pmrna37555	-	-	1e-13	At5g18070	DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101)	S.X.	H.G.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.107907.1.A1_at	CV261600	hypothetical protein	-	9e-1	At3g54940	-	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.6	99.2	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
7.2	98.1	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.4	97.7	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.1	95.5	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.9	95.1	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.8	94.9	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	2e-48	192	PtpAffx.24545.1.A1_at	CV256354	hypothetical protein	-	3e-1	At1g10745	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	5e-3	42	PtpAffx.207468.1.S1_s_at	pmrna14824	hypothetical protein	-	6e-2	At5g01445	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-3	42	PtpAffx.204174.1.S1_at	pmrna8223	hypothetical protein	-	3e-3	At4g27310	zinc finger (B-box type) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	5e-3	42	Ptp.2109.1.A1_at	CV240599	-	-	8e-46	At3g12390	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-2	40	PtpAffx.40519.1.A1_a_at	CV240898	hypothetical protein	-	4e-7	At4g11560	bromo-adjacent homology (BAH) domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-2	40	PtpAffx.222004.1.S1_at	pmrna39192	hypothetical protein	-	5e-2	At5g66631	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.00	2e-2	40	PtpAffx.209844.1.S1_a_at	pmrna19407	hypothetical protein	-	1e-111	At1g70320	UPL2 (UBIQUITIN-PROTEIN LIGASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-2	40	PtpAffx.207339.1.S1_at	pmrna14560	hypothetical protein	-	1e-9	At5g49530	SIN-like family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-2	40	PtpAffx.205545.1.S1_at	pmrna10969	hypothetical protein	-	8e-5	At5g20510	AL5 (ALFIN-LIKE 5)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-2	38	Arabidopsis thaliana	At5g63740	836494	zinc finger protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	5e-3	42	Glycine max	PsAffx.psHB023xD24f_at	PsAffx.psHB023xD24f	-	-	2e-15	At2g47260	WRKY23	C.G.	S.X.	Please select
0.05	1e-1	36	Hordeum vulgare	HW04H17u_s_at	HW04H17u	-	-	2e-1	At5g63740	zinc finger protein-related	C.G.	S.X.	Please select
0.04	3e-2	40	Oryza sativa	OsAffx.27931.2.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-1	36	Triticum aestivum	TaAffx.59844.1.S1_s_at	CA594538	-	-	3e+0	At3g02310	SEP2 (SEPALLATA 2)	C.G.	S.X.	Please select
0.04	6e-2	36	Vitis vinifera	1610854_at	BQ797704	hypothetical protein LOC100248466	-	4e-18	At1g07370	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)	C.G.	S.X.	Please select
0.04	4e-1	34	Zea mays	Zm.8130.1.A1_at	CK369071	hypothetical protein LOC100277641	-	1e+0	At5g64800	CLE21 (CLAVATA3/ESR-RELATED 21)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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