CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.210704.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.210704.1.S1_at pmrna20996 hypothetical protein - 1e+0 At5g62740 band 7 family protein S.X. H.G.
0.55 82.2 PtpAffx.218477.1.S1_x_at pmrna34105 hypothetical protein - 1e+0 At2g21650 MEE3 (MATERNAL EFFECT EMBRYO ARREST 3) S.X. H.G.
0.33 57.5 PtpAffx.214875.1.S1_at pmrna28785 hypothetical protein - 7e-1 At5g44560 VPS2.2 S.X. H.G.
0.33 57.5 PtpAffx.108016.1.A1_at CK091896 - - 4e-1 At2g43745 - S.X. H.G.
0.27 47.1 PtpAffx.218039.1.S1_at pmrna33551 hypothetical protein - 1e-8 At2g37680 - S.X. H.G.
0.17 29.1 PtpAffx.205407.1.S1_at pmrna10705 hypothetical protein - 2e+0 At3g24068 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.8 98.4 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.8 98.0 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.1 96.8 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.9 96.5 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.5 96.1 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9 95.1 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.6 94.5 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9 92.5 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-12 73 PtpAffx.211946.1.S1_s_at pmrna23454 hypothetical protein - 2e+0 At4g32240 unknown protein C.G. S.X.
0.08 3e-8 59 PtpAffx.211944.1.S1_at pmrna23452 hypothetical protein - 4e+0 At5g12990 CLE40 (CLAVATA3/ESR-RELATED 40) C.G. S.X.
0.03 9e-2 38 PtpAffx.151512.1.A1_at DN493203 - - 2e+0 At5g17570 tatD-related deoxyribonuclease family protein C.G. S.X.
0.02 4e-1 36 PtpAffx.14337.2.A1_at BU892673 - - 3e-2 At1g59860 17.6 kDa class I heat shock protein (HSP17.6A-CI) C.G. S.X.
0.02 2e+0 34 PtpAffx.8047.1.A1_at CV265327 hypothetical protein - 3e-2 At2g36610 ATHB22 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22) C.G. S.X.
0.02 2e+0 34 PtpAffx.213386.1.S1_at pmrna26194 hypothetical protein - 2e-1 At5g67480 BT4 (BTB AND TAZ DOMAIN PROTEIN 4) C.G. S.X.
0.02 2e+0 34 PtpAffx.18860.2.S1_at CA824304 hypothetical protein - 3e-30 At4g17880 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.03 6e+0 32 PtpAffx.99859.1.A1_s_at DN486640 hypothetical protein - 1e-2 At5g25110 CIPK25 (CBL-INTERACTING PROTEIN KINASE 25) C.G. S.X.
0.02 6e+0 32 PtpAffx.7393.1.S1_at CV266666 - - 2e-7 At3g56580 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At5g62740 836395 band 7 family protein F:unknown;P:N-terminal protein myristoylation;C:plasma membrane, vacuole, membrane;BOMFPAV - - - C.G. S.X.
0.03 2e+0 34 Glycine max GmaAffx.93437.1.S1_s_at CF808942 - - 3e-23 At5g10780 - C.G. S.X.
0.03 8e+0 30 Hordeum vulgare HVSMEl0008E13r2_at HVSMEl0008E13r2 - - 2e-2 At1g80640 protein kinase family protein C.G. S.X.
0.03 1e-1 38 Oryza sativa OsAffx.9082.1.A1_at - - - 0 C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.8457.1.S1_at CA625125 - - 4e+0 At5g43480 unknown protein C.G. S.X.
0.03 8e-2 36 Vitis vinifera 1615251_at CF514946 - - 2e-1 At1g72450 JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6) C.G. S.X.
0.02 2e+0 32 Zea mays Zm.14424.1.S1_at AW330924 hypothetical protein LOC100275964 - 5e-32 At1g65350 UBQ13 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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