Gene omics information

Query gene ID PtpAffx.210568.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7393.6PtpAffx.210568.1.S1_atpmrna20731hypothetical protein-3e-17At3g47720SRO4 (SIMILAR TO RCD ONE 4)S.X.H.G.
0.9199.2PtpAffx.212776.1.S1_atpmrna25004hypothetical protein-2e-3At3g47720SRO4 (SIMILAR TO RCD ONE 4)S.X.H.G.
0.8397.0PtpAffx.46129.1.S1_atCV230659hypothetical protein-4e+0At2g38646unknown proteinS.X.H.G.
0.7393.6PtpAffx.31276.1.A1_atCV241320hypothetical protein-1e+0At4g03510RMA1S.X.H.G.
0.5078.6PtpAffx.13691.1.A1_atCK095870--1e-1At5g49630AAP6 (AMINO ACID PERMEASE 6)S.X.H.G.
0.5078.6PtpAffx.222664.1.S1_atpmrna40216hypothetical protein-7e-1At4g19840ATPP2-A1S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
22.699.8GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
13.199.4GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
13.099.4GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
12.199.3GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
11.299.1GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
8.998.7GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
7.398.2GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
6.297.6GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
0.142.9GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplar
0.142.9GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.850811PtpAffx.212776.1.S1_atpmrna25004hypothetical protein-2e-3At3g47720SRO4 (SIMILAR TO RCD ONE 4)C.G.S.X.
0.244e-88325PtpAffx.158313.1.A1_atBP930507--4e+0At5g23130peptidoglycan-binding LysM domain-containing proteinC.G.S.X.
0.026e-136PtpAffx.216249.1.S1_atpmrna30903hypothetical protein-1e+0At2g40113unknown proteinC.G.S.X.
0.016e-136PtpAffx.202999.1.S1_atpmrna5939hypothetical protein-2e-38At1g53800endonucleaseC.G.S.X.
0.026e-136PtpAffx.121036.1.A1_atCV256341hypothetical protein-2e+0At5g43285-C.G.S.X.
0.026e-136Ptp.1965.1.S1_s_atCV270322hypothetical protein-5e-11At4g21960PRXR1C.G.S.X.
0.032e+034PtpAffx.28954.1.S1_atCV254543hypothetical protein-1e+0At3g52070unknown proteinC.G.S.X.
0.012e+034PtpAffx.254.1.S1_s_atCV268035hypothetical protein-1e-20At2g47115unknown proteinC.G.S.X.
0.012e+034PtpAffx.225100.1.S1_x_atpmrna44198hypothetical protein-3e-1At5g13290CRN (CORYNE)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.103e-1789Arabidopsis thalianaAt3g47720823926SRO4 (SIMILAR TO RCD ONE 4)Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.---C.G.S.X.
0.036e-136Glycine maxGma.8975.1.A1_atBU926596--5e-2At5g25000unknown proteinC.G.S.X.
0.031e+130Hordeum vulgareHY09F04u_atHY09F04u--7e-1At2g21790RNR1 (RIBONUCLEOTIDE REDUCTASE 1)C.G.S.X.
0.023e+034Oryza sativaOs01g0951800AK069239.1-TPR-like domain containing protein4e-1At5g12390FIS1B (FISSION 1B)C.G.S.X.
0.034e-136Triticum aestivumTaAffx.113792.4.S1_atCA606470--1e+0At4g17240unknown proteinC.G.S.X.
0.032e+032Vitis vinifera1618230_atCD801769hypothetical protein LOC100245789-2e+0At4g21090adrenodoxin-like ferredoxin 1C.G.S.X.
0.023e+032Zea maysZm.9933.1.A1_atBM349388--2e-5At2g19160unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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