CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.210555.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.41 67.7 PtpAffx.210555.1.S1_at pmrna20709 hypothetical protein - 4e-16 At1g23870 ATTPS9 S.X. H.G.
0.71 92.6 Ptp.3600.1.S1_at AF273256.1 sinapyl alcohol dehydrogenase - 5e-5 At4g37980 ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) S.X. H.G.
0.71 92.6 Ptp.3600.1.S1_s_at AF273256.1 sinapyl alcohol dehydrogenase - 5e-5 At4g37980 ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) S.X. H.G.
0.55 82.2 PtpAffx.221199.1.S1_at pmrna37897 hypothetical protein - 8e+0 At4g31460 ribosomal protein L28 family protein S.X. H.G.
0.55 82.2 PtpAffx.205813.1.S1_x_at pmrna11499 hypothetical protein - 7e+0 At3g18160 peroxin-3 family protein S.X. H.G.
0.50 78.6 PtpAffx.205813.1.S1_at pmrna11499 hypothetical protein - 7e+0 At3g18160 peroxin-3 family protein S.X. H.G.
0.44 71.9 PtpAffx.213042.1.S1_at pmrna25523 hypothetical protein - 7e-15 At5g51780 basix helix-loop-helix (bHLH) family protein S.X. H.G.
0.41 67.7 PtpAffx.84979.1.S1_at CV254755 hypothetical protein - 2e-4 At5g06720 peroxidase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.2 99.8 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
13.5 99.4 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
12.0 99.2 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
9.8 98.9 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.2 95.6 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.3 89.8 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7 85.5 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.92 0 3305 PtpAffx.212767.1.S1_at pmrna24981 hypothetical protein - 1e-16 At1g23870 ATTPS9 C.G. S.X.
0.13 1e-93 345 PtpAffx.37297.1.A1_at CV257396 hypothetical protein - 5e-3 At1g70290 ATTPS8 C.G. S.X.
0.10 2e-9 65 PtpAffx.220066.1.S1_at pmrna36353 hypothetical protein - 2e-42 At4g17770 ATTPS5 C.G. S.X.
0.10 8e-9 63 PtpAffx.30375.1.A1_s_at CV279142 hypothetical protein - 6e-26 At1g06410 ATTPS7 C.G. S.X.
0.05 1e-7 59 PtpAffx.79915.1.S1_s_at CV233367 hypothetical protein - 3e-6 At1g23870 ATTPS9 C.G. S.X.
0.02 1e-4 50 PtpAffx.208859.1.S1_at pmrna17561 hypothetical protein - 2e-88 At1g68020 ATTPS6 C.G. S.X.
0.05 5e-4 48 PtpAffx.214417.1.S1_at pmrna28044 hypothetical protein - 2e-15 At2g18700 ATTPS11 C.G. S.X.
0.04 7e-3 44 PtpAffx.57317.1.S1_at CV256775 hypothetical protein - 2e-9 At4g17770 ATTPS5 C.G. S.X.
0.04 1e-1 40 PtpAffx.34474.1.S1_at CK107061 hypothetical protein - 5e-3 At1g68020 ATTPS6 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 4e-16 87 Arabidopsis thaliana At1g23870 838998 ATTPS9 Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. - - - C.G. S.X.
0.19 6e-22 107 Glycine max GmaAffx.89914.1.S1_at CF805639 - - 7e-5 At1g70290 ATTPS8 C.G. S.X.
0.12 2e-10 67 Hordeum vulgare Contig4657_at Contig4657 - - 3e-5 At1g23870 ATTPS9 C.G. S.X.
0.15 7e-13 77 Oryza sativa OsAffx.29953.1.S1_at - - - 0 C.G. S.X.
0.14 4e-10 67 Triticum aestivum Ta.30416.1.S1_at CK205280 - - 3e-4 At1g23870 ATTPS9 C.G. S.X.
0.10 8e-24 111 Vitis vinifera 1618726_at CB973545 hypothetical protein LOC100265140 - 2e-27 At1g06410 ATTPS7 C.G. S.X.
0.12 4e-8 59 Zea mays Zm.3961.1.S1_at CK370362 hypothetical protein LOC100272531 - 3e-7 At1g70290 ATTPS8 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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