CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.210508.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 78.6 PtpAffx.210508.1.S1_s_at pmrna20612 hypothetical protein - 1e-28 At1g26850 dehydration-responsive family protein S.X. H.G.
0.60 86.0 PtpAffx.204681.1.S1_at pmrna9216 hypothetical protein - 4e-106 At4g34100 protein binding / zinc ion binding S.X. H.G.
0.53 80.5 PtpAffx.44545.1.A1_at CV228040 f-box family protein - 2e+0 At2g33030 AtRLP25 (Receptor Like Protein 25) S.X. H.G.
0.44 71.9 Ptp.4987.1.S1_at CK091368 hypothetical protein - 2e-13 At4g25434 ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10) S.X. H.G.
0.29 50.5 Ptp.5188.1.A1_at CV265314 hypothetical protein - 2e-21 At3g24170 ATGR1 (glutathione-disulfide reductase) S.X. H.G.
0.05 8.3 Ptp.1275.2.S1_s_at CV247404 type II peroxiredoxin - 1e-22 At1g65980 TPX1 (thioredoxin-dependent peroxidase 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.5 99.8 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
11.7 99.2 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
9.1 98.7 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
8.3 98.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
6.4 97.7 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.8 97.4 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.9 96.5 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.9 96.5 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.54 0 1721 PtpAffx.137030.1.S1_s_at BU882587 hypothetical protein - 3e-27 At1g26850 dehydration-responsive family protein C.G. S.X.
0.53 0 1037 Ptp.532.1.S1_at CK088410 hypothetical protein - 1e-4 At1g26850 dehydration-responsive family protein C.G. S.X.
0.34 1e-109 398 PtpAffx.3868.1.A1_s_at BI073061 hypothetical protein - 5e-93 At1g26850 dehydration-responsive family protein C.G. S.X.
0.42 2e-105 385 PtpAffx.208807.1.S1_at pmrna17463 hypothetical protein - 9e-103 At1g26850 dehydration-responsive family protein C.G. S.X.
0.42 2e-105 385 PtpAffx.208807.1.S1_x_at pmrna17463 hypothetical protein - 9e-103 At1g26850 dehydration-responsive family protein C.G. S.X.
0.21 2e-98 361 PtpAffx.67841.1.A1_at BP934913 - - 3e+0 At3g63030 MBD4 C.G. S.X.
0.40 3e-79 297 PtpAffx.208132.1.S1_x_at pmrna16160 hypothetical protein - 3e-103 At1g26850 dehydration-responsive family protein C.G. S.X.
0.40 3e-79 297 PtpAffx.208132.1.S1_s_at pmrna16160 hypothetical protein - 3e-103 At1g26850 dehydration-responsive family protein C.G. S.X.
0.21 3e-57 224 PtpAffx.213408.1.S1_at pmrna26230 hypothetical protein - 6e-2 At3g02910 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 1e-28 129 Arabidopsis thaliana At1g26850 839229 dehydration-responsive family protein F:unknown;P:unknown;C:Golgi apparatus, membrane;PBO - - - C.G. S.X.
0.34 4e-29 131 Glycine max Gma.4277.2.S1_a_at CA785837 - - 2e-51 At1g26850 dehydration-responsive family protein C.G. S.X.
0.14 1e-11 71 Hordeum vulgare Contig10400_s_at Contig10400 - - 4e-5 At1g26850 dehydration-responsive family protein C.G. S.X.
0.31 2e-22 109 Oryza sativa Os10g0569300 AK072459.1 - Putative methyltransferase DUF248 family protein 3e-10 At1g26850 dehydration-responsive family protein C.G. S.X.
0.24 6e-21 103 Triticum aestivum Ta.3322.1.S1_s_at CK208679 - - 4e-50 At1g26850 dehydration-responsive family protein C.G. S.X.
0.37 4e-81 301 Vitis vinifera 1612756_at CF207475 hypothetical protein LOC100258541 - 1e-45 At1g26850 dehydration-responsive family protein C.G. S.X.
0.05 1e-1 38 Zea mays Zm.2977.1.A1_at AW155840 - - 1e-5 At2g40280 dehydration-responsive family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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