CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.21035.2.S1_a_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.21035.2.S1_a_at CV259320 hypothetical protein - 1e-96 At5g10840 endomembrane protein 70, putative S.X. H.G.
0.67 91.1 Ptp.6276.1.S1_at CV275961 hypothetical protein - 1e-4 At3g44340 CEF (clone eighty-four) S.X. H.G.
0.50 78.6 PtpAffx.128147.1.A1_a_at CV226457 hypothetical protein - 2e+0 At2g27570 sulfotransferase family protein S.X. H.G.
0.36 61.6 PtpAffx.21035.1.S1_a_at CV270709 hypothetical protein - 2e-51 At5g25100 endomembrane protein 70, putative S.X. H.G.
0.36 61.6 PtpAffx.19120.1.A1_at CV260849 hypothetical protein - 4e-5 At5g11640 - S.X. H.G.
0.33 57.5 PtpAffx.21035.2.S1_at CV259320 hypothetical protein - 1e-96 At5g10840 endomembrane protein 70, putative S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.1 99.5 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
10.4 99.0 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
8.9 98.7 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.98 0 1483 PtpAffx.21035.2.S1_at CV259320 hypothetical protein - 1e-96 At5g10840 endomembrane protein 70, putative C.G. S.X.
0.53 0 811 PtpAffx.21035.1.S1_a_at CV270709 hypothetical protein - 2e-51 At5g25100 endomembrane protein 70, putative C.G. S.X.
0.30 4e-42 173 PtpAffx.38230.1.S1_at CN523327 - - 1e-88 At3g13772 endomembrane protein 70, putative C.G. S.X.
0.35 5e-26 119 PtpAffx.103697.1.A1_at CK095852 - - 2e-4 At5g25100 endomembrane protein 70, putative C.G. S.X.
0.20 6e-4 46 Ptp.4620.1.S1_a_at BI131414 - - 8e-27 At3g13772 endomembrane protein 70, putative C.G. S.X.
0.20 6e-4 46 Ptp.4620.1.S1_s_at BI131414 hypothetical protein - 8e-27 At3g13772 endomembrane protein 70, putative C.G. S.X.
0.02 5e-1 36 PtpAffx.225317.1.S1_at pmrna44580 cytochrome P450 - 2e-4 At5g36110 CYP716A1 C.G. S.X.
0.02 5e-1 36 PtpAffx.224582.1.S1_at pmrna43246 cytochrome P450 - 2e-7 At5g36110 CYP716A1 C.G. S.X.
0.02 5e-1 36 PtpAffx.203115.1.S1_at pmrna6173 hypothetical protein - 7e-9 At5g45580 transcription factor C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.36 1e-96 353 Arabidopsis thaliana At5g10840 830951 endomembrane protein 70, putative F:unknown;P:unknown;C:integral to membrane, Golgi apparatus, plasma membrane, plant-type cell wall;MPOFB - - - C.G. S.X.
0.41 2e-43 176 Glycine max Gma.5383.1.S1_a_at CD392823 - - 3e-85 At3g13772 endomembrane protein 70, putative C.G. S.X.
0.38 5e-39 161 Hordeum vulgare Contig4671_at Contig4671 - - 8e-109 At3g13772 endomembrane protein 70, putative C.G. S.X.
0.41 4e-58 226 Oryza sativa Os06g0568000 AK071892.1 - Nonaspanin (TM9SF) family protein 4e-107 At3g13772 endomembrane protein 70, putative C.G. S.X.
0.35 5e-22 105 Triticum aestivum Ta.23710.3.S1_a_at BJ215338 - - 5e-34 At3g13772 endomembrane protein 70, putative C.G. S.X.
0.51 2e-95 347 Vitis vinifera 1612522_at CF403281 hypothetical protein LOC100259324 - 7e-74 At5g10840 endomembrane protein 70, putative C.G. S.X.
0.33 2e-62 238 Zea mays Zm.3111.1.A1_at AY107180.1 hypothetical protein LOC100191479 - 5e-51 At5g25100 endomembrane protein 70, putative C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage