CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.210312.1.S1_at

Gene name CPK related kinase 4

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 78.6 PtpAffx.210312.1.S1_at pmrna20295 CPK related kinase 4 - 1e-18 At5g24430 calcium-dependent protein kinase, putative / CDPK, putative S.X. H.G.
0.83 97.0 Ptp.8056.1.S1_s_at DN498527 hypothetical protein - 1e-7 At5g64300 ATGCH S.X. H.G.
0.80 96.0 Ptp.8056.1.S1_at DN498527 hypothetical protein - 1e-7 At5g64300 ATGCH S.X. H.G.
0.73 93.6 PtpAffx.212573.1.S1_at pmrna24632 hypothetical protein - 2e-40 At5g53050 hydrolase, alpha/beta fold family protein S.X. H.G.
0.73 93.6 PtpAffx.149678.1.A1_at AJ771832 hypothetical protein - 3e-50 At5g64300 ATGCH S.X. H.G.
0.67 91.1 PtpAffx.50176.2.S1_a_at CV256175 hypothetical protein - 1e-16 At2g26830 emb1187 (embryo defective 1187) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.4 99.9 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.8 98.0 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.9 95.1 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 7e-42 173 Ptp.6594.2.A1_at DN500236 - - 2e-5 At2g46700 calcium-dependent protein kinase, putative / CDPK, putative C.G. S.X.
0.09 2e-23 111 PtpAffx.12845.1.S1_s_at CV240601 hypothetical protein - 9e-24 At2g46700 calcium-dependent protein kinase, putative / CDPK, putative C.G. S.X.
0.09 2e-23 111 PtpAffx.12845.1.S1_at CV240601 hypothetical protein - 9e-24 At2g46700 calcium-dependent protein kinase, putative / CDPK, putative C.G. S.X.
0.09 9e-20 99 PtpAffx.209253.1.S1_x_at pmrna18290 hypothetical protein - 3e+0 At4g28820 zinc finger (HIT type) family protein C.G. S.X.
0.09 9e-20 99 PtpAffx.209253.1.S1_at pmrna18290 hypothetical protein - 3e+0 At4g28820 zinc finger (HIT type) family protein C.G. S.X.
0.06 7e-5 50 PtpAffx.64889.1.S1_s_at CV225453 hypothetical protein - 3e+0 At5g22920 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.13 1e-3 46 PtpAffx.35223.1.S1_s_at DN500149 hypothetical protein - 2e-67 At2g41140 CRK1 (CDPK-RELATED KINASE 1) C.G. S.X.
0.08 5e-3 44 PtpAffx.213247.1.S1_s_at pmrna25905 hypothetical protein - 1e-126 At2g41140 CRK1 (CDPK-RELATED KINASE 1) C.G. S.X.
0.01 5e-3 44 PtpAffx.206437.1.S1_at pmrna12777 calcium dependent protein kinase 26 - 6e-42 At5g04870 CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 1e-18 95 Arabidopsis thaliana At5g24430 832514 calcium-dependent protein kinase, putative / CDPK, putative F:in 6 functions;P:N-terminal protein myristoylation;C:plasma membrane;MOPFBVA - - - C.G. S.X.
0.07 5e-3 44 Glycine max Gma.17975.2.S1_at BQ628976 - - 2e-29 At3g50530 CRK (CDPK-related kinase) C.G. S.X.
0.34 2e-36 153 Hordeum vulgare Contig16466_at Contig16466 - - 4e-15 At2g46700 calcium-dependent protein kinase, putative / CDPK, putative C.G. S.X.
0.33 1e-71 272 Oryza sativa Os.20211.1.S1_at - - - 0 C.G. S.X.
0.27 5e-36 153 Triticum aestivum TaAffx.64084.1.S1_at BJ316057 - - 7e-5 At2g41140 CRK1 (CDPK-RELATED KINASE 1) C.G. S.X.
0.47 3e-155 547 Vitis vinifera 1610570_at CA807939 hypothetical protein LOC100246879 - 2e-24 At5g24430 calcium-dependent protein kinase, putative / CDPK, putative C.G. S.X.
0.30 1e-56 220 Zea mays Zm.42.1.S1_at D84508.1 CDPK-related protein kinase - 9e-17 At2g46700 calcium-dependent protein kinase, putative / CDPK, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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