CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.2103.1.A1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.2103.1.A1_s_at CV246207 hypothetical protein - 3e-8 At4g35320 unknown protein S.X. H.G.
0.67 91.1 PtpAffx.30128.1.S1_at CV244941 hypothetical protein - 3e+0 At2g23910 cinnamoyl-CoA reductase-related S.X. H.G.
0.67 91.1 PtpAffx.219602.1.S1_s_at pmrna35561 hypothetical protein - 6e-5 At5g39390 leucine-rich repeat family protein / protein kinase family protein S.X. H.G.
0.60 86.0 PtpAffx.265.1.A1_at CV261776 hypothetical protein - 3e-89 At2g47060 serine/threonine protein kinase, putative S.X. H.G.
0.46 73.7 PtpAffx.210959.1.S1_x_at pmrna21534 hypothetical protein - 8e-23 At1g54570 esterase/lipase/thioesterase family protein S.X. H.G.
0.38 63.7 PtpAffx.224222.1.S1_s_at pmrna42573 hypothetical protein - 5e-5 At5g44380 FAD-binding domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.0 99.8 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
14.4 99.5 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
11.8 99.2 GSM372099 Clone3200_LPI5_N+_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
8.7 98.6 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.7 98.3 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.4 97.0 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5 90.9 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4 90.4 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4 90.4 GSM372044 Clone1979_LPI5_N+_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7 85.5 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.73 0 745 PtpAffx.204368.1.S1_at pmrna8585 hypothetical protein - 1e-11 At4g35320 unknown protein C.G. S.X.
0.30 2e-53 210 PtpAffx.222499.1.S1_s_at pmrna39970 hypothetical protein - 1e-5 At4g35320 unknown protein C.G. S.X.
0.29 1e-51 204 Ptp.4947.1.S1_s_at CX656465 hypothetical protein - 2e-6 At4g35320 unknown protein C.G. S.X.
0.08 4e-2 40 PtpAffx.47285.1.S1_s_at CV235046 hypothetical protein - 3e-1 At5g46795 MSP2 (microspore-specific promoter 2) C.G. S.X.
0.02 6e-1 36 PtpAffx.221049.1.S1_at pmrna37606 hypothetical protein - 6e-1 At1g52440 - C.G. S.X.
0.02 6e-1 36 PtpAffx.203862.1.S1_at pmrna7629 hypothetical protein - 6e-1 At3g46190 meprin and TRAF homology domain-containing protein / MATH domain-containing protein C.G. S.X.
0.01 2e+0 34 PtpAffx.50901.1.S1_at CV228211 hypothetical protein - 5e-5 At4g11860 - C.G. S.X.
0.02 2e+0 34 PtpAffx.48233.1.A1_at CV265875 hypothetical protein - 2e-9 At1g62600 flavin-containing monooxygenase family protein / FMO family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.45220.1.A1_at CV228824 hypothetical protein - 1e+0 At3g61200 thioesterase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 3e-8 59 Arabidopsis thaliana At4g35320 829686 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P - - - C.G. S.X.
0.03 6e-1 36 Glycine max Gma.15940.1.A1_at AW397591 - - 2e-1 At3g25545 unknown protein C.G. S.X.
0.03 8e-1 34 Hordeum vulgare EBro08_SQ009_E20_at EBro08_SQ009_E20 - - 1e+0 At3g01440 oxygen evolving enhancer 3 (PsbQ) family protein C.G. S.X.
0.03 9e-1 36 Oryza sativa OsAffx.21517.1.S1_at - - - 0 C.G. S.X.
0.02 7e+0 32 Triticum aestivum TaAffx.109010.1.S1_at CA681284 - - 9e-1 At1g69700 ATHVA22C C.G. S.X.
0.13 2e-10 65 Vitis vinifera 1613368_at CF211784 hypothetical protein LOC100243457 - 1e-1 At4g24920 protein transport protein SEC61 gamma subunit, putative C.G. S.X.
0.04 3e+0 32 Zea mays Zm.18507.1.A1_at CO533969 hypothetical protein LOC100194073 - 2e-5 At5g59580 UGT76E1 (UDP-GLUCOSYL TRANSFERASE 76E1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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