Gene omics information

Query gene ID	PtpAffx.209828.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.58	84.2	PtpAffx.209828.1.S1_s_at	pmrna19374	hypothetical protein	-	5e-95	At1g30460	CPSF30	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.114887.1.S1_at	CV240686	hypothetical protein	-	8e-60	At5g10490	MSL2 (MscS-LIKE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.34	58.3	PtpAffx.157284.1.S1_at	BI138898	hypothetical protein	-	1e-37	At1g17720	ATB BETA	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.200806.1.S1_at	pmrna1580	hypothetical protein	-	6e-20	At3g46220	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.150314.1.S1_at	BU869295	hypothetical protein	-	1e-6	At3g62770	AtATG18a	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.19954.4.S1_a_at	CV260824	hypothetical protein	-	1e+0	At5g38470	DNA repair protein RAD23, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.211018.1.S1_at	pmrna21651	hypothetical protein	-	2e-152	At5g28850	calcium-binding EF hand family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	Ptp.3625.1.A1_at	CV267089	hypothetical protein	-	2e-12	At3g07560	PEX13 (PEROXIN 13)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.9	97.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5	90.9	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.81	0	1342	PtpAffx.201251.1.S1_at	pmrna2482	hypothetical protein	-	1e-64	At1g30460	CPSF30	C.G.	S.X.	Please selecteFP Browser (expression)
0.42	1e-179	630	PtpAffx.5580.2.S1_s_at	CV243319	hypothetical protein	-	3e-21	At1g30460	CPSF30	C.G.	S.X.	Please selecteFP Browser (expression)
0.29	8e-132	472	PtpAffx.17582.1.A1_s_at	CV281458	hypothetical protein	-	1e-19	At1g30460	CPSF30	C.G.	S.X.	Please selecteFP Browser (expression)
0.29	8e-132	472	PtpAffx.17582.1.A1_at	CV281458	hypothetical protein	-	1e-19	At1g30460	CPSF30	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	9e-76	286	PtpAffx.75380.1.A1_a_at	CV245381	hypothetical protein	-	9e-1	At2g06570	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	3e-60	234	PtpAffx.5580.3.S1_a_at	CX658777	hypothetical protein	-	4e-14	At1g30460	CPSF30	C.G.	S.X.	Please selecteFP Browser (expression)
0.24	4e-50	200	PtpAffx.5580.5.S1_at	CV240415	hypothetical protein	-	4e-1	At5g28550	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-3	46	PtpAffx.203194.1.S1_s_at	pmrna6331	hypothetical protein	-	3e-5	At2g45430	DNA-binding protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-3	44	PtpAffx.210578.1.S1_at	pmrna20747	hypothetical protein	-	1e-27	At5g66540	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	5e-95	349	Arabidopsis thaliana	At1g30460	839925	CPSF30	Encodes AtCPSF30, the 30-KDa subunit of cleavage and polyadenylation specificity factor. AtCPSF30 is a probable processing endonuclease. Nucleus-localized RNA binding protein capable of interacting with itself and with calmodulin. Its RNA-binding activity is inhibited by calmodulin in a calcium-dependent fashion.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	6e-3	44	Glycine max	GmaAffx.85644.1.A1_at	CA938743	-	-	6e-2	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	C.G.	S.X.	Please select
0.01	1e-1	38	Hordeum vulgare	AF427791_CDS-9_at	AF427791_CDS-9	-	-	2e-3	At1g73500	MKK9 (MAP KINASE KINASE 9)	C.G.	S.X.	Please select
0.02	2e-6	56	Oryza sativa	Os03g0668900	AK108369.1	-	Conserved hypothetical protein	6e-1	At3g16770	ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e-2	42	Triticum aestivum	TaAffx.80461.1.S1_at	CA696724	-	-	3e-1	At4g23470	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Vitis vinifera	1619720_at	CF511234	hypothetical protein LOC100247652	-	4e-1	At5g05990	mitochondrial glycoprotein family protein / MAM33 family protein	C.G.	S.X.	Please select
0.03	5e-1	36	Zea mays	ZmAffx.783.1.S1_at	AI745854	-	-	8e-7	At1g51730	RWD domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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