Gene omics information

Query gene ID PtpAffx.209828.1.S1_s_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5884.2PtpAffx.209828.1.S1_s_atpmrna19374hypothetical protein-5e-95At1g30460CPSF30S.X.H.G.
0.5582.2PtpAffx.114887.1.S1_atCV240686hypothetical protein-8e-60At5g10490MSL2 (MscS-LIKE 2)S.X.H.G.
0.3458.3PtpAffx.157284.1.S1_atBI138898hypothetical protein-1e-37At1g17720ATB BETAS.X.H.G.
0.3255.2PtpAffx.200806.1.S1_atpmrna1580hypothetical protein-6e-20At3g46220unknown proteinS.X.H.G.
0.3255.2PtpAffx.150314.1.S1_atBU869295hypothetical protein-1e-6At3g62770AtATG18aS.X.H.G.
0.3153.7PtpAffx.19954.4.S1_a_atCV260824hypothetical protein-1e+0At5g38470DNA repair protein RAD23, putativeS.X.H.G.
0.2950.5PtpAffx.211018.1.S1_atpmrna21651hypothetical protein-2e-152At5g28850calcium-binding EF hand family proteinS.X.H.G.
0.2136.5Ptp.3625.1.A1_atCV267089hypothetical protein-2e-12At3g07560PEX13 (PEROXIN 13)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.997.4GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
2.992.5GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.691.3GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.590.9GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.590.9GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.289.3GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplar
2.088.0GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.987.2GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
1.987.2GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
1.886.4GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.8101342PtpAffx.201251.1.S1_atpmrna2482hypothetical protein-1e-64At1g30460CPSF30C.G.S.X.
0.421e-179630PtpAffx.5580.2.S1_s_atCV243319hypothetical protein-3e-21At1g30460CPSF30C.G.S.X.
0.298e-132472PtpAffx.17582.1.A1_s_atCV281458hypothetical protein-1e-19At1g30460CPSF30C.G.S.X.
0.298e-132472PtpAffx.17582.1.A1_atCV281458hypothetical protein-1e-19At1g30460CPSF30C.G.S.X.
0.119e-76286PtpAffx.75380.1.A1_a_atCV245381hypothetical protein-9e-1At2g06570unknown proteinC.G.S.X.
0.123e-60234PtpAffx.5580.3.S1_a_atCX658777hypothetical protein-4e-14At1g30460CPSF30C.G.S.X.
0.244e-50200PtpAffx.5580.5.S1_atCV240415hypothetical protein-4e-1At5g28550-C.G.S.X.
0.012e-346PtpAffx.203194.1.S1_s_atpmrna6331hypothetical protein-3e-5At2g45430DNA-binding protein-relatedC.G.S.X.
0.026e-344PtpAffx.210578.1.S1_atpmrna20747hypothetical protein-1e-27At5g66540-C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.335e-95349Arabidopsis thalianaAt1g30460839925CPSF30Encodes AtCPSF30, the 30-KDa subunit of cleavage and polyadenylation specificity factor. AtCPSF30 is a probable processing endonuclease. Nucleus-localized RNA binding protein capable of interacting with itself and with calmodulin. Its RNA-binding activity is inhibited by calmodulin in a calcium-dependent fashion.---C.G.S.X.
0.026e-344Glycine maxGmaAffx.85644.1.A1_atCA938743--6e-2At5g61270PIF7 (PHYTOCHROME-INTERACTING FACTOR7)C.G.S.X.
0.011e-138Hordeum vulgareAF427791_CDS-9_atAF427791_CDS-9--2e-3At1g73500MKK9 (MAP KINASE KINASE 9)C.G.S.X.
0.022e-656Oryza sativaOs03g0668900AK108369.1-Conserved hypothetical protein6e-1At3g16770ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN)C.G.S.X.
0.022e-242Triticum aestivumTaAffx.80461.1.S1_atCA696724--3e-1At4g23470hydroxyproline-rich glycoprotein family proteinC.G.S.X.
0.023e-136Vitis vinifera1619720_atCF511234hypothetical protein LOC100247652-4e-1At5g05990mitochondrial glycoprotein family protein / MAM33 family proteinC.G.S.X.
0.035e-136Zea maysZmAffx.783.1.S1_atAI745854--8e-7At1g51730RWD domain-containing proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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