Gene omics information

Query gene ID	PtpAffx.209763.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	92.6	PtpAffx.209763.1.S1_at	pmrna19260	hypothetical protein	-	3e+0	At5g48945	LCR46 (Low-molecular-weight cysteine-rich 46)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.103798.1.S1_at	CK091513	hypothetical protein	-	1e+0	At4g01250	WRKY22	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.219441.1.S1_x_at	pmrna35362	cc-nbs-lrr resistance protein	-	1e-1	At5g45210	disease resistance protein (TIR-NBS-LRR class), putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.102390.1.A1_at	CV227215	-	-	9e-10	At1g16680	DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.153993.1.A1_at	CV233440	hypothetical protein	-	1e+1	At4g19250	kelch repeat-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.206469.1.S1_at	pmrna12830	hypothetical protein	-	9e-3	At5g48890	transcription factor	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.214376.1.S1_at	pmrna27976	hypothetical protein	-	1e+0	At4g28365	plastocyanin-like domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.22183.1.S1_at	CK094612	-	-	6e-3	At4g06676	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.61626.4.S1_at	BP934563	-	-	1e-21	At4g12110	SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.209028.1.S1_at	pmrna17878	hypothetical protein	-	8e-1	At1g72260	THI2.1 (THIONIN 2.1)	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
40.1	100.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
7.2	98.1	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
7.2	98.1	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.5	94.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0	92.9	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.75	7e-116	416	PtpAffx.211741.1.S1_at	pmrna23010	hypothetical protein	-	3e+0	At5g39610	ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.44	5e-52	204	PtpAffx.157639.1.S1_s_at	AI162252	hypothetical protein	-	1e-22	At4g20300	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	1e-3	44	PtpAffx.210705.1.S1_at	pmrna20998	hypothetical protein	-	1e-2	At5g51010	rubredoxin family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-2	38	PtpAffx.18825.3.A1_at	CV230059	hypothetical protein	-	3e-15	At5g12190	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e-1	36	PtpAffx.46281.1.S1_at	CN524273	hypothetical protein	-	2e-9	At5g33370	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-1	36	PtpAffx.209510.1.S1_at	pmrna18844	-	-	1e-2	At1g73970	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-1	36	Ptp.7422.1.S1_at	CV264499	hypothetical protein	-	3e-15	At5g53160	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e-1	36	Ptp.6275.1.S1_s_at	BU897275	hypothetical protein	-	2e-6	At5g51010	rubredoxin family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e+0	34	PtpAffx.79351.1.S1_at	CK097108	hypothetical protein	-	9e-1	At3g48160	DEL1 (DP-E2F-LIKE 1)	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e+0	32	Arabidopsis thaliana	At5g48945	3771470	LCR46 (Low-molecular-weight cysteine-rich 46)	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+0	34	Glycine max	GmaAffx.20923.1.S1_at	AW277548	-	-	3e+0	At5g54215	-	C.G.	S.X.	Please select
0.05	4e-1	34	Hordeum vulgare	HY09G09u_at	HY09G09u	-	-	1e+0	At1g15045	-	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	Os02g0537000	AK062855.1	-	Pectinesterase inhibitor domain containing protein	4e-1	At2g21060	ATGRP2B (GLYCINE-RICH PROTEIN 2B)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-1	36	Triticum aestivum	Ta.9248.3.S1_a_at	BJ302324	-	-	4e+0	At2g47840	tic20 protein-related	C.G.	S.X.	Please select
0.03	9e-1	32	Vitis vinifera	1621692_at	BM437998	-	-	2e-2	At3g16900	unknown protein	C.G.	S.X.	Please select
0.04	5e+0	30	Zea mays	ZmAffx.1327.1.S1_s_at	40794996-36	-	-	2e+0	At4g12735	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage