Gene omics information

Query gene ID	PtpAffx.209599.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	96.0	PtpAffx.209599.1.S1_at	pmrna18984	hypothetical protein	-	6e-2	At5g50375	CPI1 (CYCLOPROPYL ISOMERASE)	S.X.	H.G.	Please selecteFP Browser (expression)
0.88	97.7	PtpAffx.162989.1.S1_at	DN502106	hypothetical protein	-	1e-1	At3g15270	SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5)	S.X.	H.G.	Please selecteFP Browser (expression)
0.82	96.3	PtpAffx.41880.1.S1_s_at	DN494500	hypothetical protein	-	1e+0	At3g62160	transferase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.82	96.3	PtpAffx.8550.1.A1_x_at	CV267401	hypothetical protein	-	5e-2	At3g04080	ATAPY1 (APYRASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.8550.3.S1_a_at	CX282912	hypothetical protein	-	2e-2	At3g23350	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.78	95.1	PtpAffx.202806.1.S1_at	pmrna5566	hypothetical protein	-	8e-1	At5g60380	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.18705.2.A1_a_at	CV262167	leucoanthocyanidin reductase	-	4e-1	At1g02000	GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.83404.1.A1_at	CA933449	flavonoid 3',5'-hydroxylase	-	2e-4	At3g48310	CYP71A22	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
43.5	100.0	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
15.1	99.5	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
12.5	99.3	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
11.8	99.2	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9	95.1	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.0	76.2	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.9	74.2	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.7	69.4	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
0.6	66.6	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	PtpAffx.134328.1.A1_at	CV239401	hypothetical protein	-	6e+0	At5g28410	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	Ptp.3377.1.S1_at	CK096262	hypothetical protein	-	2e-23	At5g65470	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	Ptp.3377.1.S1_s_at	CK096262	hypothetical protein	-	2e-23	At5g65470	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e+0	32	PtpAffx.99667.1.S1_at	DN485593	hypothetical protein	-	8e-7	At1g45130	BGAL5 (beta-galactosidase 5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e+0	32	PtpAffx.99667.1.S1_s_at	DN485593	hypothetical protein	-	8e-7	At1g45130	BGAL5 (beta-galactosidase 5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e+0	32	PtpAffx.4986.1.S1_s_at	CX660319	hypothetical protein	-	5e-7	At5g24610	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e+0	32	PtpAffx.48817.3.S1_at	CV262816	hypothetical protein	-	5e-101	At3g14100	oligouridylate-binding protein, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e+0	32	PtpAffx.48817.3.S1_a_at	CV262816	hypothetical protein	-	5e-101	At3g14100	oligouridylate-binding protein, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e+0	32	PtpAffx.214654.1.S1_at	pmrna28458	hypothetical protein	-	1e-1	At1g16810	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-2	38	Arabidopsis thaliana	At5g50375	835105	CPI1 (CYCLOPROPYL ISOMERASE)	Converts pentacyclic cyclopropyl sterols to conventional tetracyclic sterols. CPI1 function during and just after division and support gravitropism by establishing polar PIN2 localization. Required for endocytosis of PIN2	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.84433.1.S1_at	AI973549	-	-	2e-13	At1g50730	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig24817_at	Contig24817	-	-	2e-6	At3g55020	RabGAP/TBC domain-containing protein	C.G.	S.X.	Please select
0.03	7e+0	32	Oryza sativa	Os08g0116500	AK060433.1	-	60S acidic ribosomal protein P1 (L12)	1e-3	At2g27720	60S acidic ribosomal protein P2 (RPP2A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Triticum aestivum	TaAffx.134909.1.S1_at	CA634028	-	-	2e+1	At4g27750	ISI1 (IMPAIRED SUCROSE INDUCTION 1)	C.G.	S.X.	Please select
0.05	4e+0	30	Vitis vinifera	1617926_at	CF205727.1	-	-	2e+0	At5g64460	-	C.G.	S.X.	Please select
0.03	2e+1	28	Zea mays	ZmAffx.111.1.A1_at	AI665574	-	-	3e+0	At5g57565	protein kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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