Gene omics information

Query gene ID	PtpAffx.209580.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.93	99.5	PtpAffx.209580.1.S1_at	pmrna18959	hypothetical protein	-	5e-12	At1g11710	pentatricopeptide (PPR) repeat-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.41	67.7	Ptp.4697.2.A1_a_at	CV277595	-	-	8e-6	At5g27820	ribosomal protein L18 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.6725.1.S1_s_at	CV258566	hypothetical protein	-	1e-25	At4g21110	G10 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.32845.1.S1_at	CK097658	hypothetical protein	-	5e-61	At2g20140	26S protease regulatory complex subunit 4, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.34	58.3	PtpAffx.142779.1.S1_at	BP934853	hypothetical protein	-	9e-25	At1g67325	binding / zinc ion binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	Ptp.4697.1.A1_a_at	CV254017	hypothetical protein	-	5e+0	At5g48655	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.135663.1.S1_s_at	BU821395	hypothetical protein	-	6e-1	At4g28160	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.32924.1.A1_at	CV269695	-	-	4e+0	At3g60260	phagocytosis and cell motility protein ELMO1-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.48273.1.A1_at	CV265239	-	-	3e-5	At5g40280	ERA1 (ENHANCED RESPONSE TO ABA 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.30565.1.A1_at	CV269996	hypothetical protein	-	9e-11	At2g45140	PVA12 (PLANT VAP HOMOLOG 12)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.4	98.6	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.2	96.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	3e-48	194	PtpAffx.25160.1.A1_at	CV230536	hypothetical protein	-	6e-1	At1g58070	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-3	46	PtpAffx.215785.1.S1_at	pmrna30172	hypothetical protein	-	2e-29	At2g15630	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-2	40	PtpAffx.215099.1.S1_at	pmrna29076	hypothetical protein	-	3e-13	At4g25880	APUM6 (Arabidopsis Pumilio 6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	38	Ptp.5540.1.S1_at	CV244976	hypothetical protein	-	1e-7	At1g19130	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.756.2.S1_a_at	DN496305	hypothetical protein	-	2e-6	At2g16790	shikimate kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.64784.2.A1_at	CV254862	hypothetical protein	-	2e+0	At4g39235	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.224598.1.S1_at	pmrna43281	hypothetical protein	-	5e-5	At3g16890	PPR40 (PENTATRICOPEPTIDE (PPR) DOMAIN PROTEIN 40)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.219721.1.S1_at	pmrna35735	hypothetical protein	-	2e-8	At5g20860	pectinesterase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.209559.1.S1_at	pmrna18930	hypothetical protein	-	1e-21	At1g74580	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	5e-12	73	Arabidopsis thaliana	At1g11710	837715	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e-1	38	Glycine max	GmaAffx.85195.1.S1_at	BE021751	-	-	3e+0	At2g27250	CLV3 (CLAVATA3)	C.G.	S.X.	Please select
0.01	5e-1	36	Hordeum vulgare	HVSMEi0013P04r2_s_at	HVSMEi0013P04r2	-	-	4e+0	At3g15350	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	C.G.	S.X.	Please select
0.02	8e-3	44	Oryza sativa	Os04g0349600	AK070947.1	-	TPR-like domain containing protein	2e-2	At3g19160	ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	3e-1	38	Triticum aestivum	TaAffx.108816.1.S1_at	CA683758	-	-	4e+0	At3g29570	unknown protein	C.G.	S.X.	Please select
0.02	3e-4	46	Vitis vinifera	1619984_at	CF519097	hypothetical protein LOC100262657	-	3e-30	At1g77380	AAP3	C.G.	S.X.	Please select
0.01	2e+0	34	Zea mays	Zm.17756.1.S1_at	CK371270	-	-	3e+0	At4g36460	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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