Gene omics information

Query gene ID	PtpAffx.209541.1.S1_x_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	96.0	PtpAffx.209541.1.S1_x_at	pmrna18906	hypothetical protein	-	8e-2	At4g28270	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.7425.1.S1_a_at	CA824840	hypothetical protein	-	5e-3	At1g31440	SH3 domain-containing protein 1 (SH3P1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.211447.1.S1_s_at	pmrna22435	hypothetical protein	-	7e-1	At3g44750	HDA3 (HISTONE DEACETYLASE 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.3698.2.S1_at	BU894200	hypothetical protein	-	1e-82	At1g77610	glucose-6-phosphate/phosphate translocator-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.37541.1.A1_s_at	CV238987	hypothetical protein	-	2e-62	At5g26667	PYR6	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	Ptp.2525.1.S1_at	AY126444.1	cinnamyl alcohol dehydrogenase-like protein	-	9e-16	At4g39330	CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9)	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.3084.2.A1_a_at	CV244899	hypothetical protein	-	3e-45	At1g08200	AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.201570.1.S1_at	pmrna3081	hypothetical protein	-	5e-10	At5g42220	ubiquitin family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.218816.1.S1_at	pmrna34554	hypothetical protein	-	2e+0	At4g03280	PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C)	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.39452.1.A1_at	CV245395	hypothetical protein	-	1e-10	At4g17430	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.3	99.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
8.7	98.6	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
7.1	98.1	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.1	98.1	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
7.0	98.0	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.8	97.4	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.3	96.9	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.7	96.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1255	PtpAffx.209541.1.S1_s_at	pmrna18906	hypothetical protein	-	8e-2	At4g28270	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
1.00	0	1255	PtpAffx.209541.1.S1_at	pmrna18906	hypothetical protein	-	8e-2	At4g28270	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.72	1e-140	500	PtpAffx.220814.1.S1_at	pmrna37255	hypothetical protein	-	1e-1	At4g28270	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.45	2e-95	349	PtpAffx.215201.1.S1_x_at	pmrna29252	hypothetical protein	-	2e+0	At4g30670	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.45	2e-95	349	PtpAffx.215201.1.S1_at	pmrna29252	hypothetical protein	-	2e+0	At4g30670	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.57	2e-89	329	PtpAffx.222146.1.S1_at	pmrna39383	hypothetical protein	-	8e-2	At4g28270	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.64	5e-87	321	PtpAffx.209482.1.S1_s_at	pmrna18803	hypothetical protein	-	7e-2	At4g28270	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.66	7e-74	278	PtpAffx.209542.1.S1_x_at	pmrna18907	hypothetical protein	-	5e-1	At2g32200	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.66	7e-74	278	PtpAffx.209542.1.S1_at	pmrna18907	hypothetical protein	-	5e-1	At2g32200	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-2	38	Arabidopsis thaliana	At4g28270	828942	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPFOV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.88373.2.S1_at	BM526500	-	-	4e-13	At3g09960	calcineurin-like phosphoesterase family protein	C.G.	S.X.	Please select
0.03	6e-1	34	Hordeum vulgare	Contig23207_at	Contig23207	-	-	1e+0	At1g74870	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.02	1e+1	32	Oryza sativa	OsAffx.4603.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	32	Triticum aestivum	TaAffx.75735.1.A1_at	CD889870	-	-	9e-1	At5g66070	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1619226_at	CF517115	-	-	1e-6	At5g44190	GLK2 (GOLDEN2-LIKE 2)	C.G.	S.X.	Please select
0.03	8e+0	30	Zea mays	ZmAffx.624.1.A1_at	AI715052	-	-	1e+1	At4g26160	ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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